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LSDeep1_scaffold_41_prodigal-single.1__X__X__00153
Bact-VirLSDeep1_scaffold_41_prodigal-single.1__X__X__00153
Identity
- Kingdom:
- phage
Quality
93.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-89
Domain cluster:
representative
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2k2dA00 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.73 | 39.0 | 4.81e-01 | 91.0% | 87.2% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.65 | 39.0 | 4.63e-01 | 94.9% | 93.9% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.65 | 40.0 | 4.81e-01 | 96.2% | 96.0% |
| 2m4vA00 | 2.20.28.270 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › RNA polymerase-binding protein A | 0.63 | 39.0 | 3.88e-01 | 98.7% | 60.0% |
| 2kz5A00 | 1.10.880.10 | Mainly Alpha › Orthogonal Bundle › Transcription Factor Skn-1; Chain P › Transcription factor, Skn-1-like, DNA-binding domain | 0.57 | 40.0 | 3.83e-01 | 92.3% | 62.6% |
| 1plsA00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.56 | 45.0 | 4.03e-01 | 89.7% | 87.6% |
| 4gklA02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.55 | 32.0 | 3.10e-01 | 97.4% | 51.1% |
| 2dfkC02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.54 | 47.0 | 3.95e-01 | 100.0% | 85.1% |
| 2rgnB02 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.53 | 42.0 | 3.69e-01 | 88.5% | 80.5% |
| 5d3xB00 | 2.30.29.30 | Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) | 0.52 | 45.0 | 3.79e-01 | 100.0% | 81.6% |
| 7oode01 | 3.90.930.12 | Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 | 0.51 | 40.0 | 4.22e-01 | 96.2% | 95.6% |
| 2ab5A02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 42.0 | 3.60e-01 | 93.6% | 64.2% |
| 3ir9A02 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.51 | 34.0 | 3.02e-01 | 98.7% | 45.0% |
| 2gw1A02 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.50 | 41.0 | 2.63e-01 | 87.2% | 24.2% |
| 5kycB02 | 2.20.210.10 | Mainly Beta › Single Sheet › ubp-family deubiquitinating enzyme fold › ubp-family deubiquitinating enzyme superfamily | 0.50 | 31.0 | 3.60e-01 | 94.9% | 92.5% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4607892 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.79 | 38.0 | 5.23e-01 | 92.3% | 92.5% |
| 3809044 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.75 | 41.0 | 5.13e-01 | 94.9% | 93.3% |
| 3892736 | 103.1.1.67 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › UPF0515 | 0.74 | 42.0 | 5.28e-01 | 89.7% | 100.0% |
| 3480424 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 38.0 | 4.98e-01 | 94.9% | 100.0% |
| 3455086 | 650.1.1.7 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › Zn_ribbon_20 | 0.72 | 39.0 | 4.98e-01 | 91.0% | 93.3% |
| 3489248 | 375.1.1.45 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Mcm10 | 0.72 | 38.0 | 4.98e-01 | 88.5% | 100.0% |
| 4981108 | 375.1.1.331 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF5817 | 0.70 | 38.0 | 4.82e-01 | 93.6% | 93.3% |
| 5026915 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 39.0 | 4.72e-01 | 94.9% | 94.0% |
| 3507461 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.64 | 40.0 | 4.64e-01 | 94.9% | 90.9% |
| 4999109 | 109.4.1.3068 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DUF2225 | 0.61 | 43.0 | 3.18e-01 | 73.1% | 35.0% |
| 3607261 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 34.0 | 4.22e-01 | 96.2% | 93.3% |
| 3226989 | 375.1.3.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 | 0.61 | 41.0 | 4.69e-01 | 89.7% | 98.2% |
| 4933103 | 375.1.1.58 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB | 0.60 | 39.0 | 4.31e-01 | 93.6% | 85.0% |
| 4086239 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 38.0 | 4.31e-01 | 92.3% | 89.1% |
| 4956437 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.59 | 39.0 | 3.22e-01 | 98.7% | 38.5% |
| 5061487 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.57 | 39.0 | 3.25e-01 | 100.0% | 40.6% |
| 4992429 | 375.12.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related | 0.57 | 41.0 | 3.75e-01 | 74.4% | 66.0% |
| 5030549 | 375.1.3.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 | 0.57 | 37.0 | 4.27e-01 | 92.3% | 94.5% |
| 5044354 | 375.1.1.12 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_S27e | 0.56 | 38.0 | 3.91e-01 | 97.4% | 73.3% |
| 5041477 | 375.1.3.3 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF5817 | 0.55 | 39.0 | 4.33e-01 | 88.5% | 95.0% |
| 3630527 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.54 | 33.0 | 3.61e-01 | 94.9% | 73.8% |
| 5077070 | 375.1.3.1 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 › DUF1922 | 0.53 | 39.0 | 4.37e-01 | 84.6% | 100.0% |
| 4971115 | 2002.4.1.2 ↗ | a/b barrels › TIM beta/alpha-barrel › Nicotinate/Quinolinate PRTase C-terminal domain-like › Nicotinate/Quinolinate PRTase C-terminal domain-like › QRPTase_C | 0.53 | 40.0 | 2.75e-01 | 82.1% | 28.7% |
| 3751874 | 109.4.1.177 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cnd3 | 0.53 | 47.0 | 2.68e-01 | 100.0% | 9.5% |
| 5044566 | 375.12.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Nicotinate phosphoribosyltransferase C-terminal domain-related › Nicotinate phosphoribosyltransferase C-terminal domain-related | 0.53 | 38.0 | 4.01e-01 | 76.9% | 97.1% |
| 4945327 | 375.1.3.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Hypothetical protein MTH1184 | 0.52 | 39.0 | 4.13e-01 | 79.5% | 88.6% |
| 3547810 | 2007.1.19.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › FabD/lysophospholipase-like › Patatin | 0.52 | 44.0 | 3.10e-01 | 100.0% | 86.1% |
| 3206092 | 2003.1.2.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.51 | 40.0 | 2.45e-01 | 85.9% | 88.2% |
| 4963272 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.51 | 32.0 | 2.96e-01 | 93.6% | 49.0% |
| 4963432 | 4076.2.1.7 ↗ | a+b two layers › L9 N-domain-like › MbtH-like › MbtH-like › DUF5817 | 0.51 | 41.0 | 3.97e-01 | 87.2% | 77.6% |
| 3782416 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.50 | 45.0 | 2.84e-01 | 100.0% | 31.7% |