←Back to structures
LSDeep1_scaffold_41_prodigal-single.1__X__X__00155
Bact-VirLSDeep1_scaffold_41_prodigal-single.1__X__X__00155
Identity
- Kingdom:
- phage
Quality
71.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 49-126
Domain cluster:
representative
CATH (22)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3oovA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.63 | 56.0 | 4.39e-01 | 100.0% | 60.4% |
| 3ci6B00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.63 | 55.0 | 4.37e-01 | 100.0% | 55.2% |
| 3u2aA00 | 3.30.450.310 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › | 0.61 | 54.0 | 4.82e-01 | 100.0% | 83.9% |
| 1jdiA00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.61 | 51.0 | 3.79e-01 | 96.2% | 72.6% |
| 6g20A01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.61 | 54.0 | 4.06e-01 | 100.0% | 49.2% |
| 6btdA00 | 3.40.225.10 | Alpha Beta › 3-Layer(aba) Sandwich › L-fuculose-1-phosphate Aldolase › Class II aldolase/adducin N-terminal domain | 0.60 | 51.0 | 3.84e-01 | 96.2% | 72.4% |
| 3k2nA00 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.60 | 52.0 | 4.08e-01 | 100.0% | 56.5% |
| 1ykdB01 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.58 | 52.0 | 3.91e-01 | 100.0% | 48.7% |
| 4q66D01 | 6.20.120.50 | Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.57 | 33.0 | 3.44e-01 | 100.0% | 58.9% |
| 1v43A03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.56 | 31.0 | 3.37e-01 | 100.0% | 62.5% |
| 1ykdB02 | 3.30.450.40 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain | 0.56 | 50.0 | 3.79e-01 | 100.0% | 51.3% |
| 1i99I02 | 2.30.39.10 | Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 | 0.56 | 38.0 | 3.33e-01 | 92.3% | 47.0% |
| 2z0uA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.54 | 49.0 | 4.14e-01 | 100.0% | 94.5% |
| 3mr0A01 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.54 | 48.0 | 4.30e-01 | 100.0% | 88.2% |
| 2dmgA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.54 | 48.0 | 3.97e-01 | 100.0% | 85.2% |
| 1h2cA00 | 2.70.20.20 | Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Matrix protein VP40, N-terminal domain | 0.54 | 41.0 | 3.50e-01 | 100.0% | 50.8% |
| 2bwqA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.53 | 47.0 | 4.06e-01 | 100.0% | 93.4% |
| 3cjeA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.52 | 44.0 | 3.56e-01 | 92.3% | 68.7% |
| 1jg5A00 | 3.30.1410.10 | Alpha Beta › 2-Layer Sandwich › Gtp Cyclohydrolase I Feedback Regulatory Protein; Chain: K › GTP cyclohydrolase I feedback regulatory protein GFRP | 0.51 | 45.0 | 4.42e-01 | 100.0% | 98.8% |
| 4jpqA00 | 2.60.40.1190 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 38.0 | 2.88e-01 | 84.6% | 97.3% |
| 3d30A02 | 2.60.40.760 | Mainly Beta › Sandwich › Immunoglobulin-like › Expansin, cellulose-binding-like domain | 0.50 | 44.0 | 4.21e-01 | 100.0% | 95.7% |
| 2id0A02 | 2.40.50.640 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.50 | 31.0 | 3.19e-01 | 100.0% | 64.4% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3809440 | 226.1.1.20 ↗ | a+b two layers › POZ domain › POZ domain › POZ domain › PF30468, PF30469 | 0.70 | 50.0 | 4.29e-01 | 100.0% | 47.2% |
| 3194310 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.67 | 59.0 | 4.39e-01 | 100.0% | 61.1% |
| 4030967 | 274.1.1.0 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits | 0.65 | 38.0 | 3.37e-01 | 100.0% | 40.7% |
| 3607182 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.65 | 57.0 | 4.48e-01 | 100.0% | 67.6% |
| 3277662 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.64 | 55.0 | 4.99e-01 | 100.0% | 96.4% |
| 3952595 | 223.1.1.23 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 | 0.63 | 56.0 | 4.30e-01 | 100.0% | 55.0% |
| 4959373 | 223.1.1.23 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 | 0.63 | 56.0 | 4.42e-01 | 100.0% | 58.8% |
| 3950174 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.63 | 55.0 | 4.33e-01 | 100.0% | 58.2% |
| 4966102 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.63 | 55.0 | 4.22e-01 | 100.0% | 52.4% |
| 4988344 | 223.1.1.23 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 | 0.62 | 56.0 | 4.33e-01 | 100.0% | 57.1% |
| 3198261 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.62 | 37.0 | 2.80e-01 | 100.0% | 24.2% |
| 3510139 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.61 | 55.0 | 4.08e-01 | 100.0% | 50.3% |
| 3500689 | 281.1.1.1 ↗ | a+b three layers › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › AraD-like aldolase/epimerase › Aldolase_II | 0.61 | 51.0 | 3.69e-01 | 96.2% | 67.5% |
| 3623139 | 223.1.1.3 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF | 0.60 | 54.0 | 3.79e-01 | 100.0% | 38.8% |
| 3507359 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.60 | 54.0 | 4.43e-01 | 100.0% | 92.9% |
| 3366877 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 52.0 | 3.55e-01 | 100.0% | 34.9% |
| 4001313 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.59 | 52.0 | 4.05e-01 | 100.0% | 78.9% |
| 3914779 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.58 | 52.0 | 4.42e-01 | 100.0% | 93.1% |
| 5020787 | 223.1.1.23 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › GAF_2 | 0.58 | 51.0 | 4.03e-01 | 100.0% | 54.5% |
| 5040742 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.58 | 52.0 | 3.94e-01 | 100.0% | 82.7% |
| 3832257 | 844.1.1.1 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Tub | 0.57 | 51.0 | 3.55e-01 | 100.0% | 83.8% |
| 3309425 | 844.1.1.1 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Tub | 0.57 | 51.0 | 3.50e-01 | 100.0% | 86.0% |
| 3273846 | 5.1.3.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed | 0.57 | 50.0 | 3.39e-01 | 100.0% | 99.7% |
| 3496035 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.57 | 51.0 | 3.79e-01 | 100.0% | 96.9% |
| 4563304 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.57 | 51.0 | 3.36e-01 | 100.0% | 100.0% |
| 4969025 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.57 | 50.0 | 3.89e-01 | 100.0% | 54.3% |
| 3823661 | 5.1.5.96 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 | 0.56 | 51.0 | 3.42e-01 | 100.0% | 99.0% |
| 3789605 | 225.1.1.0 ↗ | a+b two layers › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase-like › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase › ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase | 0.56 | 35.0 | 2.48e-01 | 100.0% | 19.6% |
| 2429383 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.56 | 50.0 | 3.31e-01 | 100.0% | 99.1% |
| 3821261 | 844.1.1.1 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Tub | 0.56 | 51.0 | 3.48e-01 | 100.0% | 83.7% |
| 4022776 | 880.1.1.1 ↗ | a+b duplicates or obligate multimers › ADC synthase › ADC synthase › ADC synthase › Chorismate_bind | 0.56 | 50.0 | 3.06e-01 | 100.0% | 21.4% |
| 3635423 | 844.1.1.0 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain | 0.56 | 50.0 | 3.78e-01 | 100.0% | 79.5% |
| 4371091 | 5.1.4.35 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase | 0.56 | 50.0 | 3.29e-01 | 100.0% | 99.7% |
| 3744710 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.55 | 47.0 | 3.06e-01 | 100.0% | 84.4% |
| 3546318 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.55 | 49.0 | 3.87e-01 | 100.0% | 75.6% |
| 3657779 | 5.1.5.1 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 | 0.55 | 48.0 | 3.08e-01 | 100.0% | 77.1% |
| 5083382 | 2.1.1.13 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › eIF-5a | 0.54 | 33.0 | 3.60e-01 | 100.0% | 76.7% |
| 4017595 | 306.10.1.6 ↗ | a+b two layers › Glucose permease domain IIB-like › H1 domain of KCTD12 › H1 domain of KCTD12 › PF28980 | 0.54 | 48.0 | 4.11e-01 | 100.0% | 97.6% |
| 4468322 | 218.1.1.8 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › HrcA | 0.53 | 36.0 | 3.32e-01 | 100.0% | 55.0% |
| 3612838 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 37.0 | 3.57e-01 | 100.0% | 63.3% |
| 4984579 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.52 | 44.0 | 2.81e-01 | 100.0% | 17.7% |
| 3317211 | 844.1.1.2 ↗ | beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › LOR | 0.52 | 46.0 | 3.51e-01 | 100.0% | 80.9% |
| 3512923 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.52 | 43.0 | 3.60e-01 | 100.0% | 51.4% |
| 3880184 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 45.0 | 3.40e-01 | 100.0% | 49.0% |
| 4521118 | 2484.1.1.41 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › AnmK | 0.51 | 44.0 | 3.36e-01 | 100.0% | 85.5% |
| 5028142 | 5.1.4.0 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed | 0.51 | 44.0 | 3.00e-01 | 100.0% | 95.7% |
| 3811973 | 5.1.3.6 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1 | 0.51 | 44.0 | 2.98e-01 | 97.4% | 98.7% |
| 3233582 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.50 | 36.0 | 2.44e-01 | 75.6% | 39.7% |