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LSDeep1_scaffold_41_prodigal-single.1__X__X__00211
Bact-VirLSDeep1_scaffold_41_prodigal-single.1__X__X__00211
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-89
Domain cluster:
rep: IMGVR_UViG_3300032006_002050-3300032006-Ga0310344_100038483__D2-86
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3by7E00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.90 | 75.0 | 7.98e-01 | 91.9% | 98.7% |
| 4m7dA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.89 | 57.0 | 6.52e-01 | 77.9% | 86.2% |
| 4x9cD00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.89 | 46.0 | 5.56e-01 | 76.7% | 75.0% |
| 1m5q101 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.86 | 55.0 | 6.14e-01 | 80.2% | 82.4% |
| 1kq1H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.85 | 46.0 | 5.21e-01 | 79.1% | 69.7% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.84 | 46.0 | 5.23e-01 | 80.2% | 71.2% |
| 4f7uF00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.83 | 55.0 | 6.00e-01 | 79.1% | 80.8% |
| 2ej9A02 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.83 | 43.0 | 5.58e-01 | 75.6% | 89.8% |
| 2rm4A01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.82 | 54.0 | 6.07e-01 | 79.1% | 87.9% |
| 4c92G00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.81 | 57.0 | 6.07e-01 | 81.4% | 82.7% |
| 4emhA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.81 | 53.0 | 6.31e-01 | 76.7% | 96.7% |
| 4c92F00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.80 | 57.0 | 6.08e-01 | 80.2% | 83.1% |
| 2vc8A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.79 | 52.0 | 5.66e-01 | 79.1% | 80.6% |
| 3udcA02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.77 | 40.0 | 5.04e-01 | 79.1% | 86.0% |
| 6v4xC01 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.75 | 51.0 | 4.81e-01 | 80.2% | 60.0% |
| 4c92B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.74 | 52.0 | 4.82e-01 | 80.2% | 59.0% |
| 5ajiB02 | 2.30.30.60 | Mainly Beta › Roll › SH3 type barrels. › | 0.69 | 37.0 | 4.59e-01 | 79.1% | 88.0% |
| 2mysA01 | 2.30.30.360 | Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal | 0.68 | 36.0 | 4.58e-01 | 77.9% | 91.7% |
| 1d3bB00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.68 | 54.0 | 5.54e-01 | 88.4% | 88.9% |
| 1y71A00 | 2.30.30.430 | Mainly Beta › Roll › SH3 type barrels. › Kinase associated protein B domain | 0.67 | 49.0 | 4.53e-01 | 94.2% | 60.6% |
| 6bogA02 | 2.30.30.930 | Mainly Beta › Roll › SH3 type barrels. › | 0.66 | 43.0 | 4.88e-01 | 83.7% | 95.0% |
| 2hbpA00 | 2.30.30.700 | Mainly Beta › Roll › SH3 type barrels. › SLA1 homology domain 1 | 0.65 | 39.0 | 4.33e-01 | 76.7% | 77.3% |
| 2e12A00 | 2.30.30.720 | Mainly Beta › Roll › SH3 type barrels. › Protein of unknown function (DUF3247) | 0.64 | 46.0 | 4.47e-01 | 82.6% | 68.8% |
| 1ne8A00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.63 | 55.0 | 5.03e-01 | 98.8% | 94.0% |
| 7d8gA01 | 2.40.380.10 | Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like | 0.62 | 45.0 | 3.65e-01 | 77.9% | 53.9% |
| 3jscA00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.62 | 54.0 | 5.26e-01 | 100.0% | 99.0% |
| 5hk0B00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.61 | 53.0 | 5.03e-01 | 100.0% | 96.3% |
| 4ifdI02 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.60 | 42.0 | 3.61e-01 | 74.4% | 79.2% |
| 3ptaA03 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.59 | 51.0 | 4.13e-01 | 97.7% | 66.3% |
| 5uctB00 | 2.30.30.110 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 51.0 | 4.94e-01 | 100.0% | 98.0% |
| 3fb9B00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.59 | 39.0 | 3.95e-01 | 79.1% | 69.0% |
| 4jglA00 | 2.40.128.530 | Mainly Beta › Beta Barrel › Lipocalin › | 0.55 | 48.0 | 4.03e-01 | 100.0% | 90.1% |
| 1ywuA00 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.53 | 38.0 | 3.31e-01 | 73.3% | 60.8% |
ECOD (53)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4813032 | 4.1.1.328 ↗ | beta barrels › SH3 › SH3 › SH3 › Sm_like | 0.91 | 77.0 | 8.05e-01 | 94.2% | 97.5% |
| 1482194 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.89 | 46.0 | 5.56e-01 | 76.7% | 75.0% |
| 4400642 | 4.1.1.257 ↗ | beta barrels › SH3 › SH3 › SH3 › Flag1_repress | 0.88 | 48.0 | 4.85e-01 | 77.9% | 55.3% |
| 1263519 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.87 | 46.0 | 5.45e-01 | 79.1% | 74.2% |
| 3172870 | 4.1.1.67 ↗ | beta barrels › SH3 › SH3 › SH3 › FDF | 0.87 | 53.0 | 5.17e-01 | 79.1% | 56.8% |
| 3473732 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.86 | 54.0 | 6.15e-01 | 79.1% | 84.6% |
| 4658938 | 4.1.1.96 ↗ | beta barrels › SH3 › SH3 › SH3 › Hfq | 0.85 | 46.0 | 4.60e-01 | 80.2% | 52.2% |
| 2167708 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.84 | 52.0 | 5.96e-01 | 79.1% | 83.1% |
| 3602785 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.84 | 52.0 | 6.13e-01 | 80.2% | 90.0% |
| 5044296 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.83 | 61.0 | 6.38e-01 | 79.1% | 83.3% |
| 3270749 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.82 | 60.0 | 6.23e-01 | 83.7% | 81.2% |
| 3783301 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.82 | 52.0 | 4.88e-01 | 79.1% | 53.3% |
| 4024727 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 55.0 | 5.09e-01 | 80.2% | 58.7% |
| 5038431 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.79 | 50.0 | 5.56e-01 | 76.7% | 80.0% |
| 3832288 | 4.1.1.81 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM14 | 0.79 | 60.0 | 5.98e-01 | 80.2% | 81.1% |
| 5081091 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.78 | 60.0 | 5.82e-01 | 81.4% | 86.3% |
| 3598657 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.77 | 52.0 | 4.97e-01 | 79.1% | 60.0% |
| 3617549 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.77 | 53.0 | 4.93e-01 | 79.1% | 58.1% |
| 5060199 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.75 | 58.0 | 5.43e-01 | 81.4% | 86.7% |
| 5069300 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.73 | 56.0 | 5.22e-01 | 80.2% | 86.7% |
| 4293453 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.73 | 49.0 | 5.15e-01 | 91.9% | 75.0% |
| 4340758 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 48.0 | 5.37e-01 | 76.7% | 84.3% |
| 3943751 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.72 | 42.0 | 4.72e-01 | 77.9% | 76.9% |
| 5032402 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 53.0 | 5.41e-01 | 79.1% | 82.4% |
| 4976962 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 59.0 | 5.64e-01 | 89.5% | 82.0% |
| 3598052 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.71 | 56.0 | 5.51e-01 | 87.2% | 78.9% |
| 4073433 | 4.1.1.97 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF150_C | 0.70 | 51.0 | 5.33e-01 | 84.9% | 80.0% |
| 3820621 | 4.1.1.81 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM14 | 0.70 | 54.0 | 5.64e-01 | 80.2% | 88.7% |
| 3368568 | 4.1.1.81 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM14 | 0.69 | 56.0 | 5.55e-01 | 84.9% | 83.3% |
| 5003274 | 4.1.1.222 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF6948 | 0.69 | 60.0 | 5.97e-01 | 95.3% | 97.8% |
| 3965254 | 4.1.1.222 ↗ | beta barrels › SH3 › SH3 › SH3 › DUF6948 | 0.69 | 60.0 | 5.85e-01 | 95.3% | 92.6% |
| 3702167 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.68 | 54.0 | 4.87e-01 | 83.7% | 70.4% |
| 184917 | 4.1.1.81 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM14 | 0.67 | 55.0 | 5.18e-01 | 86.0% | 77.2% |
| 4998666 | 316.1.1.0 ↗ | a+b three layers › Nucleotidyltransferase-like › Nucleotidyltransferase › Nucleotidyltransferase | 0.64 | 51.0 | 3.88e-01 | 87.2% | 68.6% |
| 1109151 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.63 | 55.0 | 4.98e-01 | 100.0% | 93.3% |
| 3948209 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 40.0 | 4.29e-01 | 83.7% | 76.0% |
| 4961922 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.61 | 54.0 | 5.04e-01 | 100.0% | 95.4% |
| 4938225 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.61 | 53.0 | 4.96e-01 | 97.7% | 98.1% |
| 5027789 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.60 | 52.0 | 4.98e-01 | 97.7% | 97.0% |
| 5012680 | 4.1.1.30 ↗ | beta barrels › SH3 › SH3 › SH3 › PemK_toxin | 0.60 | 51.0 | 4.81e-01 | 97.7% | 97.3% |
| 4078260 | 4.1.1.52 ↗ | beta barrels › SH3 › SH3 › SH3 › ZapC_C | 0.58 | 41.0 | 4.09e-01 | 82.6% | 70.0% |
| 3934655 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.58 | 42.0 | 4.28e-01 | 76.7% | 97.6% |
| 4470746 | 4.1.1.61 ↗ | beta barrels › SH3 › SH3 › SH3 › KapB | 0.57 | 49.0 | 4.41e-01 | 95.3% | 68.3% |
| 3625264 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.56 | 45.0 | 4.43e-01 | 93.0% | 80.0% |
| 3174327 | 4.1.1.41 ↗ | beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C | 0.56 | 38.0 | 2.88e-01 | 74.4% | 30.8% |
| 2464332 | 3523.1.1.1 ↗ | beta meanders › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › Periplasmic lipopolysaccharide transport protein LptA (YhbN) › LptF_LptG | 0.55 | 40.0 | 3.90e-01 | 76.7% | 94.8% |
| 4033182 | 4.1.1.61 ↗ | beta barrels › SH3 › SH3 › SH3 › KapB | 0.54 | 46.0 | 4.16e-01 | 95.3% | 68.3% |
| 3602012 | 331.23.1.0 ↗ | a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain | 0.54 | 30.0 | 3.24e-01 | 95.3% | 64.3% |
| 3795384 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 43.0 | 3.23e-01 | 93.0% | 34.9% |
| 3947980 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.53 | 38.0 | 3.67e-01 | 75.6% | 83.0% |
| 4246480 | 1.1.5.25 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ | 0.52 | 38.0 | 3.75e-01 | 76.7% | 87.4% |
| 2325452 | 10.1.1.11 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_16 | 0.52 | 42.0 | 3.07e-01 | 88.4% | 49.0% |
| 3289618 | 101.1.8.0 ↗ | alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes | 0.51 | 37.0 | 3.19e-01 | 79.1% | 60.6% |