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LSDeep1_scaffold_41_prodigal-single.1__X__X__00226

Bact-Vir

LSDeep1_scaffold_41_prodigal-single.1__X__X__00226

Identity

Kingdom:
phage

Quality

96.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-97
PDB
D2 high residues 113-218
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF09116.16 best gp45-slide_C 39.0 1.20e-09 93.4% 91.3%
CATH (28)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.91 86.0 6.50e-01 100.0% 49.6%
6j8yA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.81 72.0 5.35e-01 96.2% 46.7%
1sxjH02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 72.0 6.77e-01 96.2% 93.8%
4rkiA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.80 72.0 6.69e-01 97.2% 92.3%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.79 71.0 5.35e-01 97.2% 47.3%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.79 72.0 5.38e-01 98.1% 47.5%
6j8yC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.79 71.0 5.25e-01 97.2% 47.1%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 71.0 5.32e-01 97.2% 47.9%
3p91A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 71.0 5.35e-01 98.1% 48.2%
1vpkA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 71.0 6.87e-01 98.1% 95.8%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 72.0 6.03e-01 99.1% 65.7%
3t0pA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.78 71.0 5.70e-01 97.2% 57.5%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.78 71.0 5.25e-01 99.1% 47.3%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 71.0 6.78e-01 99.1% 92.6%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 70.0 6.91e-01 98.1% 99.1%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.77 67.0 5.12e-01 91.5% 48.4%
8dqwG01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.77 67.0 5.64e-01 94.3% 74.9%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 70.0 6.57e-01 99.1% 90.6%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.77 69.0 6.57e-01 98.1% 97.6%
4tr6A01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 70.0 5.79e-01 99.1% 67.2%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.76 69.0 5.20e-01 99.1% 48.6%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.76 69.0 5.84e-01 99.1% 67.4%
1t6lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.76 67.0 5.03e-01 95.3% 46.2%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.75 68.0 6.72e-01 98.1% 99.1%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.75 69.0 6.53e-01 99.1% 91.1%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 67.0 5.11e-01 97.2% 48.3%
2r41A00 3.10.450.150 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › enterococcus faecalis protein 0.58 44.0 4.44e-01 96.2% 83.5%
1p9rA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 42.0 4.14e-01 97.2% 82.0%
ECOD (79)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2392884 227.1.1.14 a+b two layers › DNA clamp › DNA clamp › DNA clamp › gp45-slide_C 0.91 86.0 8.24e-01 100.0% 94.2%
5052551 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 74.0 6.96e-01 97.2% 92.8%
3738030 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.81 72.0 6.62e-01 95.3% 90.4%
4939066 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.81 73.0 6.85e-01 97.2% 92.2%
3782606 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.81 74.0 6.63e-01 99.1% 91.7%
4372908 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.81 73.0 6.85e-01 96.2% 88.8%
3503503 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.80 74.0 6.59e-01 99.1% 97.2%
3503502 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.80 72.0 6.67e-01 96.2% 94.6%
3598259 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.80 73.0 6.69e-01 98.1% 95.6%
3760926 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.80 73.0 6.65e-01 99.1% 91.4%
5037345 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 72.0 6.67e-01 97.2% 91.7%
5033948 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 72.0 6.73e-01 97.2% 89.2%
5029787 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 73.0 6.96e-01 97.2% 95.0%
4941929 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 72.0 6.75e-01 97.2% 91.4%
138072 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 72.0 6.71e-01 97.2% 92.4%
4976500 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 72.0 6.74e-01 97.2% 91.4%
4998585 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.80 72.0 6.93e-01 97.2% 95.0%
4934002 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 72.0 6.68e-01 97.2% 90.0%
4055466 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 71.0 6.77e-01 97.2% 95.2%
3251045 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 71.0 6.23e-01 97.2% 77.9%
4943405 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 71.0 6.70e-01 96.2% 94.4%
5028024 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 72.0 6.66e-01 97.2% 90.0%
1871497 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.79 71.0 6.85e-01 97.2% 92.4%
5010672 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.79 71.0 6.83e-01 97.2% 97.5%
143428 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 71.0 6.77e-01 96.2% 93.3%
2492036 227.1.1.8 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_3 0.79 71.0 6.67e-01 98.1% 89.9%
3804177 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.79 72.0 6.44e-01 99.1% 98.6%
5043507 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 69.0 6.64e-01 94.3% 96.7%
3722114 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.79 72.0 6.28e-01 99.1% 94.8%
3397928 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.79 73.0 6.85e-01 100.0% 100.0%
1290662 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.79 71.0 6.37e-01 97.2% 84.6%
3251867 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.78 71.0 6.57e-01 97.2% 93.1%
3743106 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.78 69.0 6.19e-01 95.3% 93.8%
3223650 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.78 72.0 6.43e-01 100.0% 93.8%
4038410 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.78 71.0 6.45e-01 99.1% 97.1%
2834343 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.78 71.0 5.87e-01 99.1% 74.7%
3997015 227.1.1.4 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad1 0.78 68.0 6.36e-01 94.3% 90.8%
1549269 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.77 71.0 6.80e-01 99.1% 93.4%
2442100 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.77 71.0 6.48e-01 99.1% 89.7%
3478161 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.77 71.0 6.49e-01 99.1% 97.0%
3596476 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.77 68.0 6.12e-01 95.3% 95.1%
5052550 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.77 71.0 6.67e-01 99.1% 97.6%
4047098 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.77 71.0 6.77e-01 99.1% 96.7%
5043506 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.77 71.0 6.67e-01 99.1% 93.6%
4315973 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.77 70.0 6.65e-01 99.1% 94.4%
4934001 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.77 70.0 6.64e-01 99.1% 97.6%
2392242 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.77 70.0 6.91e-01 99.1% 92.9%
3406312 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.77 69.0 6.55e-01 97.2% 96.7%
4302174 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.77 70.0 6.57e-01 98.1% 92.8%
3507499 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.77 68.0 6.24e-01 95.3% 95.6%
5056757 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.77 70.0 6.63e-01 99.1% 93.6%
5039026 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.77 70.0 6.73e-01 99.1% 93.3%
3785352 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.77 70.0 6.02e-01 100.0% 91.5%
3436491 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.76 69.0 5.97e-01 98.1% 93.1%
2987540 227.1.1.3 a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.76 70.0 6.49e-01 99.1% 86.9%
3702817 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.76 70.0 6.45e-01 99.1% 95.5%
3743107 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.76 70.0 6.37e-01 100.0% 94.3%
4870150 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 69.0 6.41e-01 99.1% 91.0%
4943404 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.76 69.0 6.43e-01 98.1% 93.1%
4941928 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 70.0 6.68e-01 99.1% 97.5%
4057537 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 69.0 6.54e-01 98.1% 92.8%
3719143 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.76 69.0 6.37e-01 99.1% 93.3%
3244230 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.76 70.0 6.16e-01 100.0% 92.7%
3507498 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.76 70.0 6.17e-01 100.0% 91.3%
3789624 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.76 70.0 6.31e-01 100.0% 93.6%
5078494 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 69.0 6.55e-01 99.1% 94.4%
3480669 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.76 69.0 6.25e-01 100.0% 94.4%
3939755 227.1.1.0 a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.76 70.0 6.18e-01 100.0% 87.8%
4608521 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.76 69.0 5.57e-01 100.0% 77.5%
162047 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 68.0 6.42e-01 98.1% 92.1%
143269 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.75 69.0 6.52e-01 99.1% 94.4%
3602548 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.75 69.0 6.49e-01 99.1% 94.4%
4987602 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.75 68.0 6.48e-01 99.1% 95.2%
5044014 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.75 68.0 6.59e-01 97.2% 99.1%
143267 227.1.1.1 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.75 69.0 6.48e-01 100.0% 94.5%
3597091 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.74 68.0 6.42e-01 99.1% 96.0%
3388100 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.53 44.0 2.99e-01 97.2% 24.4%
3989004 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.51 42.0 3.05e-01 96.2% 30.6%
3183650 319.1.1.14 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › HECT_2 0.51 36.0 3.82e-01 74.5% 84.2%