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LSDeep1_scaffold_41_prodigal-single.1__X__X__00241
Bact-VirLSDeep1_scaffold_41_prodigal-single.1__X__X__00241
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-49
Domain cluster:
rep: MT028491.1__QIG66056.1__phiOC_p414__00390__D2-52
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1z1bA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.79 | 62.0 | 5.80e-01 | 85.1% | 78.9% |
| 2drpA01 | 3.30.160.60 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger | 0.65 | 45.0 | 4.90e-01 | 72.3% | 100.0% |
| 7neaA01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.61 | 44.0 | 3.26e-01 | 76.6% | 71.9% |
| 3gmiA02 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.60 | 44.0 | 2.83e-01 | 78.7% | 23.3% |
| 4bmjA00 | 6.20.250.40 | Special › Other non-globular › Double Stranded RNA Binding Domain › | 0.58 | 38.0 | 3.56e-01 | 76.6% | 51.6% |
| 2v25A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.56 | 43.0 | 3.18e-01 | 87.2% | 31.5% |
| 2y8yA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.55 | 38.0 | 2.95e-01 | 74.5% | 95.7% |
| 2ifcA01 | 1.10.580.10 | Mainly Alpha › Orthogonal Bundle › Citrate Synthase; domain 1 › Citrate Synthase, domain 1 | 0.55 | 45.0 | 2.89e-01 | 93.6% | 82.0% |
| 3lxqA01 | 3.30.1120.80 | Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › | 0.53 | 38.0 | 3.01e-01 | 76.6% | 81.8% |
| 5troA01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.52 | 39.0 | 2.42e-01 | 85.1% | 53.7% |
| 3v4rA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 39.0 | 2.46e-01 | 80.9% | 87.8% |
| 2w00A05 | 1.20.58.2040 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.52 | 37.0 | 2.94e-01 | 76.6% | 40.6% |
| 1nktA02 | 3.90.1440.10 | Alpha Beta › Alpha-Beta Complex › Pre-protein croslinking domain of SecA › SecA, preprotein cross-linking domain | 0.50 | 41.0 | 3.11e-01 | 93.6% | 80.3% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3974688 | 4325.1.1.0 ↗ | mixed a+b and a/b › YegP-like › YegP-like › YegP-like | 0.71 | 57.0 | 5.67e-01 | 93.6% | 100.0% |
| 4010105 | 2006.1.1.11 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase_3 | 0.66 | 48.0 | 3.36e-01 | 78.7% | 26.5% |
| 3874708 | 386.1.1.20 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-met | 0.63 | 41.0 | 4.47e-01 | 78.7% | 84.2% |
| 1807407 | 102.8.1.0 ↗ | alpha arrays › HhH/H2TH › UPF0348 protein MJ0951 C-terminal domain › UPF0348 protein MJ0951 C-terminal domain | 0.60 | 44.0 | 2.73e-01 | 78.7% | 18.8% |
| 3221979 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.57 | 42.0 | 3.56e-01 | 85.1% | 63.3% |
| 3715519 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.55 | 44.0 | 2.89e-01 | 87.2% | 39.5% |
| 4281576 | 7101.1.1.1 ↗ | extended segments › Prp8-binding region of SLU7 › Prp8-binding region of SLU7 › Prp8-binding region of SLU7 › Slu7 | 0.55 | 42.0 | 3.18e-01 | 83.0% | 43.5% |
| 5081423 | 378.1.1.3 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › Endonuclease_7 | 0.55 | 36.0 | 3.26e-01 | 74.5% | 41.9% |
| 3225238 | 376.1.1.27 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_5 | 0.54 | 38.0 | 3.06e-01 | 72.3% | 82.4% |
| 3596170 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.54 | 43.0 | 3.26e-01 | 89.4% | 92.8% |
| 3906295 | 7579.1.1.38 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › BAAT_C | 0.53 | 40.0 | 2.53e-01 | 87.2% | 64.0% |
| 3796903 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.52 | 38.0 | 3.17e-01 | 78.7% | 85.9% |
| 3404575 | 101.1.15.1 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS | 0.51 | 41.0 | 3.33e-01 | 89.4% | 84.4% |