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LSDeep1_scaffold_41_prodigal-single.1__X__X__00243

Bact-Vir

LSDeep1_scaffold_41_prodigal-single.1__X__X__00243

Identity

Kingdom:
phage

Quality

91.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-53
PDB
Domain cluster: representative
CATH (58)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.79 68.0 5.79e-01 100.0% 77.2%
3e1sA01 1.10.10.2220 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.78 66.0 5.37e-01 100.0% 53.7%
6mh4A03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.77 54.0 4.51e-01 80.9% 44.3%
7ar7E01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.73 58.0 5.35e-01 100.0% 68.3%
8e9gE01 1.10.10.1590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › NADH-quinone oxidoreductase subunit E 0.73 57.0 5.25e-01 100.0% 66.7%
4y0bA00 1.10.1780.10 Mainly Alpha › Orthogonal Bundle › Double Clp-N motif › Clp, N-terminal domain 0.71 56.0 4.07e-01 91.5% 75.7%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 56.0 4.64e-01 97.9% 48.3%
2ffhA03 1.10.260.30 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › Signal recognition particle, SRP54 subunit, M-domain 0.70 59.0 4.61e-01 100.0% 44.0%
3bf7A00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.70 53.0 3.41e-01 100.0% 16.5%
1fnnB03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 57.0 4.57e-01 97.9% 49.5%
1jwjA01 3.90.340.10 Alpha Beta › Alpha-Beta Complex › Nitric Oxide Synthase; Chain A, domain 1 › Nitric Oxide Synthase; Chain A, domain 1 0.68 52.0 3.53e-01 83.0% 23.7%
3keyA01 1.10.10.1080 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Stn1, N-terminal wHTH domain 0.67 48.0 3.95e-01 76.6% 44.8%
3k6hA01 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.67 48.0 3.32e-01 80.9% 22.2%
3i2fA02 1.10.3020.10 Mainly Alpha › Orthogonal Bundle › alpha-amino acid ester hydrolase ( Helical cap domain) › alpha-amino acid ester hydrolase ( Helical cap domain) 0.67 48.0 3.87e-01 78.7% 70.5%
1j09A05 1.10.10.350 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.66 54.0 4.45e-01 100.0% 48.0%
2nriB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 53.0 4.45e-01 97.9% 50.0%
1p6rA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.66 50.0 4.40e-01 97.9% 52.4%
2cqqA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 52.0 4.77e-01 100.0% 65.7%
1zq3P00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.66 52.0 4.70e-01 100.0% 63.2%
1g3nC01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.65 53.0 4.00e-01 100.0% 36.7%
3e3vA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.64 49.0 4.87e-01 100.0% 84.9%
2da3A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 51.0 5.15e-01 100.0% 89.4%
2ecbA01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.64 51.0 5.02e-01 100.0% 82.4%
3dptB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.63 48.0 4.49e-01 95.7% 66.7%
3dd9D02 6.10.140.2060 Special › Helix non-globular › Helix Hairpins › 0.63 44.0 4.57e-01 78.7% 97.6%
2da4A01 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.62 54.0 4.82e-01 97.9% 71.2%
1b5lA00 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.62 49.0 3.48e-01 87.2% 59.9%
3f8mA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.62 48.0 4.50e-01 100.0% 67.7%
3t5vA00 1.25.40.990 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.62 50.0 3.16e-01 100.0% 16.1%
1uzcA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.61 51.0 4.64e-01 100.0% 68.1%
3ehfD01 1.20.5.1930 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.61 49.0 4.47e-01 97.9% 66.7%
1nm2A02 3.40.366.10 Alpha Beta › 3-Layer(aba) Sandwich › Malonyl-Coenzyme A Acyl Carrier Protein; domain 2 › Malonyl-Coenzyme A Acyl Carrier Protein, domain 2 0.61 52.0 3.37e-01 100.0% 30.1%
2pusA02 1.10.287.540 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 44.0 4.30e-01 100.0% 69.8%
1hlvA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.61 49.0 4.68e-01 100.0% 86.7%
3c1dA03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 48.0 4.91e-01 97.9% 97.8%
3b2eF00 1.10.287.660 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.61 51.0 4.69e-01 100.0% 71.0%
2b5dX01 3.20.110.10 Alpha Beta › Alpha-Beta Barrel › 7-stranded beta/alpha barrel › Glycoside hydrolase 38, N terminal domain 0.61 48.0 2.86e-01 100.0% 11.1%
3kxaA02 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.60 53.0 4.75e-01 100.0% 87.9%
6f1eA01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.60 49.0 3.46e-01 95.7% 30.2%
1u8bA02 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.59 43.0 4.19e-01 100.0% 70.5%
2g47A04 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.59 46.0 3.08e-01 100.0% 61.7%
3s64A00 1.10.225.10 Mainly Alpha › Orthogonal Bundle › NK-Lysin › Saposin-like 0.58 45.0 4.02e-01 97.9% 67.9%
3ddhA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 44.0 3.98e-01 97.9% 74.1%
2cwoA01 1.20.58.1200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › RNA silencing suppressor P21, N-terminal domain 0.58 52.0 4.44e-01 100.0% 81.1%
4pdyA02 3.90.1200.10 Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe 0.57 44.0 3.01e-01 100.0% 35.2%
8sbeA01 1.20.1250.20 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains 0.57 50.0 3.32e-01 100.0% 67.3%
7odyC01 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.57 48.0 3.92e-01 100.0% 50.0%
3iqtA01 1.20.120.160 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain 0.56 47.0 3.66e-01 100.0% 100.0%
2mgqA00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.56 45.0 4.12e-01 97.9% 67.6%
4pswA03 1.10.10.390 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.55 45.0 4.40e-01 100.0% 83.3%
3favD00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.55 48.0 4.10e-01 100.0% 98.7%
3u3wA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.55 46.0 4.11e-01 97.9% 85.5%
4bxoA02 1.10.150.20 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain 0.53 42.0 3.88e-01 100.0% 65.7%
6b8hO01 1.10.520.20 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.53 42.0 3.52e-01 100.0% 60.6%
2oznB01 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.53 45.0 3.87e-01 100.0% 61.3%
2awiA01 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.53 43.0 3.96e-01 97.9% 89.6%
4ix7A00 1.10.10.2590 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › BEN domain 0.52 37.0 2.94e-01 78.7% 32.5%
2nsfA01 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.52 44.0 3.11e-01 100.0% 59.7%
ECOD (47)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4665743 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.83 72.0 5.54e-01 97.9% 44.8%
4999522 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.82 71.0 5.32e-01 100.0% 43.7%
3554511 101.1.2.206 alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.81 69.0 5.86e-01 97.9% 58.7%
4518250 109.4.1.1660 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF27570 0.79 58.0 3.38e-01 78.7% 9.5%
5051143 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.78 64.0 5.59e-01 95.7% 61.3%
4931473 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 66.0 5.97e-01 100.0% 70.8%
5053497 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.76 62.0 5.79e-01 95.7% 75.0%
3404571 101.1.2.206 alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH 0.75 63.0 5.44e-01 100.0% 61.3%
3574560 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 65.0 5.31e-01 100.0% 52.2%
4964972 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.75 61.0 5.60e-01 95.7% 69.8%
4984847 101.1.2.128 alpha arrays › HTH › HTH › winged helix domain › DUF2582 0.73 56.0 5.18e-01 97.9% 64.6%
3316616 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.73 50.0 4.77e-01 72.3% 81.8%
4525456 864.1.1.2 a+b two layers › DLC › DLC › DLC › Tctex-1 0.72 61.0 4.70e-01 100.0% 84.3%
5021067 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.72 59.0 4.68e-01 97.9% 43.8%
4972388 101.1.2.949 alpha arrays › HTH › HTH › winged helix domain › PF28863 0.71 58.0 3.91e-01 100.0% 22.7%
4082662 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.71 60.0 4.14e-01 100.0% 27.6%
4932829 4016.1.1.1 alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › DNA_topoisoIV 0.70 59.0 4.23e-01 100.0% 31.7%
3438464 5063.1.1.0 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.70 49.0 4.92e-01 78.7% 74.0%
3430953 605.1.1.0 alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase 0.70 51.0 3.92e-01 78.7% 34.5%
4985881 7523.1.1.27 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › NMT1_2 0.70 57.0 3.72e-01 95.7% 68.9%
4165729 101.1.1.31 alpha arrays › HTH › HTH › Three-helical HTH › Sigma70_r4 0.69 54.0 3.67e-01 100.0% 24.2%
3978848 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.69 55.0 4.61e-01 100.0% 50.6%
4236937 101.1.1.5 alpha arrays › HTH › HTH › Three-helical HTH › TetR_N 0.68 56.0 5.32e-01 100.0% 78.3%
3189719 5063.1.1.0 alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK 0.67 48.0 4.63e-01 78.7% 85.5%
4982919 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.67 57.0 4.40e-01 100.0% 41.7%
4995680 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.67 57.0 5.36e-01 100.0% 80.0%
3726085 101.1.2.127 alpha arrays › HTH › HTH › winged helix domain › Cullin_Nedd8 0.64 52.0 4.45e-01 100.0% 61.2%
3461216 101.1.1.269 alpha arrays › HTH › HTH › Three-helical HTH › DUF7769 0.63 54.0 4.71e-01 100.0% 62.7%
4963971 601.7.1.34 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129 0.62 49.0 4.02e-01 89.4% 63.3%
3880111 4082.1.1.1 alpha duplicates or obligate multimers › Hairy Orange domain › Hairy Orange domain › Hairy Orange domain › Hairy_orange 0.62 47.0 4.86e-01 95.7% 86.7%
4029357 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.61 42.0 3.23e-01 70.2% 36.2%
3433370 101.1.10.3 alpha arrays › HTH › HTH › Cyclin-like › TFIIB 0.61 51.0 4.21e-01 100.0% 50.0%
3488655 7563.1.1.6 a/b three-layered sandwiches › MCP/YpsA-related › MCP/YpsA-related › MCP/YpsA-related › LSDAT_euk 0.61 51.0 3.16e-01 100.0% 16.4%
381796 101.1.4.3 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3 0.60 53.0 3.84e-01 100.0% 44.3%
3218434 101.1.2.22 alpha arrays › HTH › HTH › winged helix domain › PCI 0.60 46.0 4.17e-01 100.0% 58.7%
4136906 5069.1.3.1 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt 0.59 43.0 3.41e-01 87.2% 35.8%
4031192 632.19.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.58 46.0 4.11e-01 89.4% 91.4%
3505115 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.58 50.0 3.69e-01 100.0% 37.7%
4031191 632.19.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.58 45.0 3.95e-01 89.4% 86.7%
3394753 192.5.1.12 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › PH_19 0.57 50.0 4.42e-01 100.0% 67.1%
4034228 632.19.1.3 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A › DUF1542 0.57 45.0 3.95e-01 93.6% 57.3%
3507798 101.1.1.1 alpha arrays › HTH › HTH › Three-helical HTH › Homeodomain 0.56 49.0 4.42e-01 100.0% 72.3%
3416398 509.1.1.0 alpha bundles › PAH2 domain › PAH2 domain › PAH2 domain 0.56 45.0 4.04e-01 97.9% 72.0%
3771668 4133.1.1.0 alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like 0.53 42.0 3.50e-01 100.0% 47.8%
4033 620.1.1.5 alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › MDMPI_N 0.52 44.0 3.11e-01 100.0% 59.4%
3744474 109.54.1.1 alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp12 0.52 42.0 3.36e-01 95.7% 44.0%
56815 620.1.1.0 alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases 0.52 44.0 3.10e-01 100.0% 48.8%