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LSDeep1_scaffold_41_prodigal-single.1__X__X__00266
Bact-VirLSDeep1_scaffold_41_prodigal-single.1__X__X__00266
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-52
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3p2aA01 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.73 | 50.0 | 5.58e-01 | 74.0% | 100.0% |
| 2pptA01 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.71 | 48.0 | 5.36e-01 | 76.0% | 97.3% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.70 | 49.0 | 4.93e-01 | 74.0% | 79.6% |
| 4me3A03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.69 | 48.0 | 4.70e-01 | 74.0% | 78.2% |
| 1gaxA01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.66 | 47.0 | 2.85e-01 | 76.0% | 37.0% |
| 2zuoA08 | 2.30.30.620 | Mainly Beta › Roll › SH3 type barrels. › | 0.65 | 38.0 | 3.67e-01 | 74.0% | 48.3% |
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.64 | 44.0 | 4.44e-01 | 74.0% | 80.0% |
| 3doaA03 | 3.40.970.40 | Alpha Beta › 3-Layer(aba) Sandwich › Ribonuclease HI; Chain A › fibrinogen binding protein from staphylococcus aureus domain like | 0.61 | 34.0 | 3.60e-01 | 74.0% | 58.1% |
| 3aa0B01 | 1.20.58.570 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › F-actin capping protein, alpha/beta subunit, N-terminal domain | 0.60 | 41.0 | 3.52e-01 | 74.0% | 43.2% |
| 2pstX00 | 3.90.820.10 | Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id | 0.59 | 35.0 | 3.32e-01 | 74.0% | 44.3% |
| 3akjA02 | 1.10.1070.20 | Mainly Alpha › Orthogonal Bundle › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, Domain 5 › | 0.58 | 43.0 | 3.05e-01 | 90.0% | 72.1% |
| 5ffiE00 | 3.10.20.30 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Beta-grasp domain | 0.57 | 45.0 | 3.70e-01 | 94.0% | 73.5% |
| 3weeA01 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.56 | 45.0 | 3.18e-01 | 94.0% | 86.3% |
| 1k0rA01 | 3.30.1480.10 | Alpha Beta › 2-Layer Sandwich › N Utilization Substance Protein A; Chain:P; domain 4 › NusA, N-terminal domain | 0.54 | 39.0 | 3.27e-01 | 82.0% | 60.6% |
| 6a97C01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.53 | 35.0 | 2.69e-01 | 76.0% | 27.5% |
| 1fx2A00 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.52 | 42.0 | 2.75e-01 | 92.0% | 89.4% |
| 5lznA00 | 3.10.20.360 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › CKK domain | 0.51 | 38.0 | 3.03e-01 | 82.0% | 83.8% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4011699 | 4224.1.1.0 ↗ | few secondary structure elements › CHY zinc finger › CHY zinc finger › CHY zinc finger | 0.80 | 55.0 | 5.15e-01 | 74.0% | 60.0% |
| 3694248 | 4224.1.1.1 ↗ | few secondary structure elements › CHY zinc finger › CHY zinc finger › CHY zinc finger › zf-CHY | 0.78 | 52.0 | 4.57e-01 | 70.0% | 47.9% |
| 4982196 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 52.0 | 5.91e-01 | 74.0% | 100.0% |
| 5065789 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.78 | 56.0 | 6.10e-01 | 76.0% | 95.0% |
| 5039298 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.76 | 50.0 | 5.73e-01 | 70.0% | 100.0% |
| 3277720 | 375.1.1.185 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 | 0.75 | 51.0 | 5.57e-01 | 72.0% | 90.0% |
| 5068970 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 52.0 | 5.69e-01 | 76.0% | 97.4% |
| 4995774 | 375.1.1.185 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 | 0.73 | 51.0 | 5.46e-01 | 74.0% | 95.0% |
| 1874307 | 375.1.1.65 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Thio2_N | 0.73 | 50.0 | 5.58e-01 | 74.0% | 100.0% |
| 5061487 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.73 | 50.0 | 3.68e-01 | 74.0% | 26.8% |
| 5012898 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 52.0 | 4.99e-01 | 78.0% | 68.3% |
| 3711290 | 375.10.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Zinc finger domain of DNA polymerase-alpha › Zinc finger domain of DNA polymerase-alpha | 0.72 | 53.0 | 4.99e-01 | 80.0% | 65.0% |
| 3612070 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 53.0 | 5.79e-01 | 86.0% | 100.0% |
| 4941241 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 51.0 | 5.18e-01 | 76.0% | 76.0% |
| 5054307 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 50.0 | 5.23e-01 | 76.0% | 84.4% |
| 2793102 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 46.0 | 5.24e-01 | 70.0% | 100.0% |
| 5059205 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 49.0 | 5.31e-01 | 76.0% | 95.0% |
| 3946860 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 47.0 | 4.96e-01 | 76.0% | 80.0% |
| 1281652 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 48.0 | 4.70e-01 | 74.0% | 78.2% |
| 3604642 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 47.0 | 4.92e-01 | 74.0% | 84.4% |
| 4969277 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 48.0 | 5.15e-01 | 80.0% | 95.0% |
| 3192072 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.66 | 56.0 | 5.71e-01 | 100.0% | 95.9% |
| 5034626 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.66 | 46.0 | 4.92e-01 | 76.0% | 95.0% |
| 4955635 | 375.1.1.63 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › LysW-like_globular | 0.64 | 49.0 | 4.58e-01 | 84.0% | 73.4% |
| 3235875 | 376.1.4.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › Ariadne-1 protein homolog › IBR | 0.64 | 53.0 | 4.83e-01 | 98.0% | 88.6% |
| 4025860 | 4050.1.1.1 ↗ | few secondary structure elements › beta-barrel domain in Capz › beta-barrel domain in Capz › beta-barrel domain in Capz › F_actin_cap_B | 0.63 | 44.0 | 4.54e-01 | 74.0% | 82.2% |
| 4512216 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.63 | 47.0 | 4.80e-01 | 86.0% | 98.0% |
| 5078687 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.61 | 44.0 | 3.25e-01 | 80.0% | 59.3% |
| 1504294 | 4050.1.1.1 ↗ | few secondary structure elements › beta-barrel domain in Capz › beta-barrel domain in Capz › beta-barrel domain in Capz › F_actin_cap_B | 0.60 | 41.0 | 4.37e-01 | 74.0% | 88.1% |
| 3376010 | 375.3.1.1 ↗ | few secondary structure elements › Rubredoxin-like › CSL zinc finger › CSL zinc finger › zf-DNL | 0.60 | 50.0 | 4.94e-01 | 100.0% | 100.0% |
| 3902618 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 35.0 | 2.94e-01 | 74.0% | 60.0% |
| 3702861 | 375.1.1.19 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › RNA_POL_M_15KD | 0.51 | 36.0 | 3.51e-01 | 76.0% | 70.9% |
| 3420048 | 101.1.12.6 ↗ | alpha arrays › HTH › HTH › HTH motif inserted in other structures › Transposase_28 | 0.50 | 40.0 | 2.92e-01 | 100.0% | 53.3% |