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LSDeep1_scaffold_41_prodigal-single.1__X__X__00288
Bact-VirLSDeep1_scaffold_41_prodigal-single.1__X__X__00288
Identity
- Kingdom:
- phage
Quality
71.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-68
Domain cluster:
representative
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7aooB01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.65 | 38.0 | 2.86e-01 | 86.6% | 23.5% |
| 4ad9A02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 49.0 | 4.56e-01 | 91.0% | 79.8% |
| 4uhiA01 | 1.10.630.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 | 0.57 | 46.0 | 2.87e-01 | 91.0% | 31.8% |
| 4by6D02 | 1.25.40.800 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.57 | 47.0 | 3.42e-01 | 100.0% | 48.4% |
| 3upuA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.55 | 40.0 | 2.95e-01 | 76.1% | 65.9% |
| 2ehbD00 | 3.30.310.80 | Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 | 0.54 | 41.0 | 3.32e-01 | 80.6% | 100.0% |
| 2mh2A00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 43.0 | 4.38e-01 | 85.1% | 90.6% |
| 5nl9A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 47.0 | 4.32e-01 | 92.5% | 97.6% |
| 4rayA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 46.0 | 4.26e-01 | 94.0% | 96.5% |
| 1p6rA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 43.0 | 4.05e-01 | 86.6% | 73.2% |
| 2zdiB00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 47.0 | 4.10e-01 | 100.0% | 99.1% |
| 4ofzA01 | 1.20.58.1800 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 46.0 | 3.87e-01 | 98.5% | 55.8% |
| 1u5tB02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 44.0 | 4.44e-01 | 89.6% | 91.3% |
| 3aeiA00 | 1.10.287.370 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.53 | 44.0 | 3.91e-01 | 98.5% | 63.8% |
| 6juvB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 42.0 | 4.03e-01 | 86.6% | 85.3% |
| 1t6sA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 41.0 | 3.80e-01 | 88.1% | 72.1% |
| 5xnsC00 | 1.10.10.580 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Structural maintenance of chromosome 1. Chain E | 0.51 | 42.0 | 4.21e-01 | 89.6% | 91.4% |
| 1o57A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 40.0 | 3.94e-01 | 88.1% | 79.2% |
| 3lmmB05 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.51 | 38.0 | 3.99e-01 | 88.1% | 90.2% |
| 4a6dA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 41.0 | 3.68e-01 | 91.0% | 63.8% |
ECOD (19)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3961816 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.72 | 40.0 | 4.81e-01 | 74.6% | 82.2% |
| 3996571 | 101.1.2.53 ↗ | alpha arrays › HTH › HTH › winged helix domain › Mnd1 | 0.70 | 40.0 | 4.55e-01 | 79.1% | 76.0% |
| 4025195 | 4133.1.1.0 ↗ | alpha arrays › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like › Emsy N terminal (ENT) domain-like | 0.66 | 56.0 | 4.29e-01 | 97.0% | 40.0% |
| 4339648 | 101.1.2.852 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF27213 | 0.64 | 51.0 | 4.59e-01 | 88.1% | 69.5% |
| 4024318 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 51.0 | 4.73e-01 | 86.6% | 84.7% |
| 4025349 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.63 | 53.0 | 4.29e-01 | 94.0% | 96.2% |
| 4937327 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.61 | 37.0 | 4.00e-01 | 79.1% | 72.7% |
| 5082299 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 36.0 | 3.24e-01 | 79.1% | 42.1% |
| 4989284 | 101.1.2.63 ↗ | alpha arrays › HTH › HTH › winged helix domain › FaeA | 0.60 | 35.0 | 4.18e-01 | 80.6% | 88.6% |
| 5040772 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.60 | 35.0 | 4.15e-01 | 77.6% | 86.7% |
| 3966756 | 3226.1.1.1 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › Xan_ur_permease | 0.59 | 50.0 | 3.16e-01 | 100.0% | 68.2% |
| 3554511 | 101.1.2.206 ↗ | alpha arrays › HTH › HTH › winged helix domain › SAMD1_WH | 0.55 | 47.0 | 4.44e-01 | 92.5% | 88.7% |
| 3254236 | 192.2.1.0 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin | 0.55 | 47.0 | 4.14e-01 | 100.0% | 98.1% |
| 4939108 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 40.0 | 4.08e-01 | 92.5% | 83.1% |
| 5082581 | 101.1.2.89 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_DeoR | 0.52 | 39.0 | 4.18e-01 | 85.1% | 100.0% |
| 5057781 | 101.1.2.55 ↗ | alpha arrays › HTH › HTH › winged helix domain › SMC_ScpB | 0.51 | 41.0 | 3.89e-01 | 86.6% | 77.5% |
| 4987855 | 101.1.2.650 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF7343 | 0.51 | 38.0 | 3.60e-01 | 100.0% | 65.9% |
| 5082771 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 42.0 | 3.97e-01 | 92.5% | 92.5% |
| 3630462 | 192.2.1.2 ↗ | alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin | 0.50 | 44.0 | 3.51e-01 | 100.0% | 48.6% |