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LSDeep1_scaffold_41_prodigal-single.1__X__X__00347
Bact-VirLSDeep1_scaffold_41_prodigal-single.1__X__X__00347
Identity
- Kingdom:
- phage
Quality
90.6
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-105
Domain cluster:
representative
CATH (46)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3chvA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.67 | 53.0 | 3.88e-01 | 84.8% | 43.0% |
| 1qwgA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.66 | 56.0 | 4.28e-01 | 93.3% | 58.6% |
| 5v1qB01 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.65 | 52.0 | 3.80e-01 | 86.7% | 45.1% |
| 6r62A00 | 3.20.20.60 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains | 0.64 | 50.0 | 3.82e-01 | 83.8% | 55.6% |
| 2d1pC00 | 3.40.1260.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Ychn; Chain: A, › DsrEFH-like | 0.64 | 45.0 | 4.74e-01 | 75.2% | 81.1% |
| 1zccA00 | 3.20.20.190 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase | 0.63 | 50.0 | 3.80e-01 | 84.8% | 70.0% |
| 3hzhA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 46.0 | 4.27e-01 | 78.1% | 76.1% |
| 3eulB00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 45.0 | 4.25e-01 | 76.2% | 81.5% |
| 1sfjB00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.61 | 51.0 | 4.01e-01 | 92.4% | 62.2% |
| 5ybwA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 38.0 | 3.97e-01 | 70.5% | 67.3% |
| 4fc7D00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 45.0 | 3.41e-01 | 81.9% | 87.1% |
| 2qv0A00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.59 | 44.0 | 4.19e-01 | 79.0% | 82.0% |
| 3f4wA00 | 3.20.20.70 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I | 0.59 | 49.0 | 3.91e-01 | 91.4% | 62.1% |
| 3cz5C00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 51.0 | 4.69e-01 | 99.0% | 97.9% |
| 5k1sB00 | 3.90.180.10 | Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain | 0.58 | 37.0 | 2.62e-01 | 70.5% | 20.1% |
| 1e5xA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.58 | 39.0 | 3.94e-01 | 72.4% | 69.6% |
| 4l07A00 | 3.40.50.850 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Isochorismatase-like | 0.57 | 42.0 | 3.44e-01 | 79.0% | 64.4% |
| 4z2yA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 42.0 | 3.35e-01 | 79.0% | 71.6% |
| 2nwhA00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.56 | 47.0 | 3.43e-01 | 94.3% | 35.5% |
| 8k1fC01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 37.0 | 3.09e-01 | 72.4% | 36.7% |
| 1vm7B00 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.55 | 42.0 | 3.13e-01 | 82.9% | 34.3% |
| 3f6cA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.55 | 49.0 | 4.63e-01 | 99.0% | 98.4% |
| 6m9uB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 46.0 | 3.60e-01 | 95.2% | 78.0% |
| 1g0nB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.55 | 47.0 | 3.61e-01 | 96.2% | 83.1% |
| 3ausA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 46.0 | 3.54e-01 | 96.2% | 93.9% |
| 1o7jA02 | 3.40.50.40 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 41.0 | 4.10e-01 | 81.9% | 99.1% |
| 2d6fA03 | 3.40.50.40 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 46.0 | 4.25e-01 | 94.3% | 92.8% |
| 1u04A03 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 40.0 | 3.38e-01 | 78.1% | 69.1% |
| 4e3zB00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 44.0 | 3.57e-01 | 94.3% | 89.0% |
| 4rctA01 | 3.30.870.10 | Alpha Beta › 2-Layer Sandwich › Endonuclease; Chain A › Endonuclease Chain A | 0.54 | 45.0 | 3.73e-01 | 91.4% | 84.9% |
| 3wtbC00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.54 | 44.0 | 3.41e-01 | 89.5% | 88.9% |
| 3l77A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 45.0 | 3.58e-01 | 96.2% | 99.1% |
| 6oz7B00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 45.0 | 3.58e-01 | 96.2% | 87.7% |
| 1w6uD00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.53 | 45.0 | 3.39e-01 | 96.2% | 75.5% |
| 8c9vA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.53 | 40.0 | 3.42e-01 | 81.9% | 73.5% |
| 8kcaB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 46.0 | 3.99e-01 | 100.0% | 84.2% |
| 3ai2A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 42.0 | 3.22e-01 | 88.6% | 89.7% |
| 3clvA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.52 | 40.0 | 3.44e-01 | 82.9% | 69.1% |
| 7crnA01 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.52 | 44.0 | 3.33e-01 | 93.3% | 86.8% |
| 3ucxA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 40.0 | 3.15e-01 | 85.7% | 67.1% |
| 3fhlA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 37.0 | 3.45e-01 | 76.2% | 84.1% |
| 1id1A00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.52 | 42.0 | 3.79e-01 | 92.4% | 87.6% |
| 5idyA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 44.0 | 3.42e-01 | 100.0% | 86.3% |
| 4bmvI00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 40.0 | 3.17e-01 | 89.5% | 90.6% |
| 3bcvA00 | 3.90.550.10 | Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A | 0.50 | 35.0 | 2.90e-01 | 75.2% | 39.3% |
| 5kzkA02 | 3.40.1280.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alpha/beta knot › SPOUT methyltransferase, trefoil knot domain | 0.50 | 38.0 | 3.33e-01 | 80.0% | 85.9% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2323965 | 2002.1.1.125 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM,SPASM | 0.68 | 59.0 | 4.15e-01 | 96.2% | 69.2% |
| 5035994 | 2002.1.1.84 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › MtrH | 0.66 | 55.0 | 4.19e-01 | 91.4% | 60.0% |
| 3959945 | 2002.1.1.106 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD | 0.65 | 52.0 | 3.91e-01 | 84.8% | 55.7% |
| 3494545 | 2002.1.1.2 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Enolase_C | 0.65 | 46.0 | 3.33e-01 | 74.3% | 39.9% |
| 4294142 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.63 | 46.0 | 3.12e-01 | 76.2% | 37.7% |
| 3279620 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.61 | 55.0 | 4.99e-01 | 100.0% | 100.0% |
| 4160637 | 2004.1.1.73 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › MMR_HSR1 | 0.60 | 43.0 | 3.62e-01 | 76.2% | 81.6% |
| 4992503 | 2002.1.1.120 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM | 0.60 | 50.0 | 3.51e-01 | 91.4% | 54.6% |
| 4174971 | 2002.1.1.9 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase | 0.59 | 49.0 | 3.97e-01 | 91.4% | 59.8% |
| 5030583 | 246.2.1.9 ↗ | a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos_2 | 0.59 | 43.0 | 3.71e-01 | 76.2% | 47.9% |
| 5035607 | 2002.1.1.60 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 | 0.59 | 50.0 | 3.80e-01 | 92.4% | 61.9% |
| 169576 | 2002.1.1.9 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › OMPdecase | 0.59 | 49.0 | 3.91e-01 | 91.4% | 62.1% |
| 5069195 | 2007.9.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Toll/Interleukin receptor TIR domain › Toll/Interleukin receptor TIR domain | 0.58 | 43.0 | 3.98e-01 | 79.0% | 78.5% |
| 5063937 | 2002.1.1.39 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Glyco_hydro_3 | 0.57 | 51.0 | 3.26e-01 | 100.0% | 91.2% |
| 4649560 | 2007.1.3.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Response_reg | 0.56 | 51.0 | 4.64e-01 | 100.0% | 97.1% |
| 5057271 | 2006.1.6.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like › VWA | 0.56 | 41.0 | 3.65e-01 | 78.1% | 82.6% |
| 3198174 | 7579.1.1.0 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases | 0.55 | 47.0 | 3.23e-01 | 94.3% | 76.2% |
| 5039701 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.55 | 44.0 | 3.44e-01 | 86.7% | 66.0% |
| 4061833 | 2005.1.1.18 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › NAD_synthase | 0.55 | 38.0 | 2.79e-01 | 71.4% | 26.0% |
| 3965997 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.55 | 40.0 | 3.86e-01 | 78.1% | 81.6% |
| 4013455 | 2003.1.1.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains | 0.54 | 45.0 | 3.44e-01 | 93.3% | 95.5% |
| 3284318 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.54 | 45.0 | 3.56e-01 | 94.3% | 90.4% |
| 4591841 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.54 | 46.0 | 3.47e-01 | 98.1% | 95.5% |
| 5045698 | 2003.1.1.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 | 0.54 | 44.0 | 3.36e-01 | 89.5% | 84.0% |
| 5063354 | 2003.1.1.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 | 0.54 | 43.0 | 3.29e-01 | 86.7% | 62.7% |
| 4957276 | 7507.1.1.1 ↗ | a/b three-layered sandwiches › Glutaminase/Asparaginase C-terminal domain › Glutaminase/Asparaginase C-terminal domain › Glutaminase/Asparaginase C-terminal domain › Asparaginase_C | 0.54 | 46.0 | 4.27e-01 | 93.3% | 96.9% |
| 4511668 | 300.1.1.8 ↗ | a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease › PLDc_2 | 0.54 | 41.0 | 3.37e-01 | 90.5% | 44.1% |
| 142111 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.53 | 45.0 | 3.58e-01 | 96.2% | 99.1% |
| 3959651 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 35.0 | 3.30e-01 | 78.1% | 53.1% |
| 1514718 | 2003.1.1.69 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short_C2 | 0.53 | 44.0 | 3.41e-01 | 90.5% | 87.9% |
| 3713239 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.53 | 39.0 | 3.27e-01 | 81.0% | 59.0% |
| 3693282 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.53 | 43.0 | 3.28e-01 | 90.5% | 86.4% |
| 3921128 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.53 | 38.0 | 3.08e-01 | 76.2% | 54.6% |
| 4961221 | 2005.1.1.0 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains | 0.52 | 37.0 | 3.71e-01 | 75.2% | 70.9% |
| 148422 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.52 | 44.0 | 3.48e-01 | 96.2% | 89.2% |
| 3188241 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.52 | 43.0 | 3.46e-01 | 91.4% | 88.6% |
| 3733155 | 2003.1.1.142 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › KR, adh_short_C2 | 0.52 | 43.0 | 3.27e-01 | 93.3% | 88.7% |
| 4951543 | 2006.1.2.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases | 0.52 | 38.0 | 3.21e-01 | 79.0% | 53.8% |
| 5082618 | 2485.1.1.31 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Redoxin | 0.51 | 36.0 | 3.07e-01 | 74.3% | 47.8% |
| 3816085 | 2003.1.1.3 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short | 0.51 | 42.0 | 3.25e-01 | 93.3% | 85.9% |
| 3237561 | 7590.1.1.2 ↗ | a/b three-layered sandwiches › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Middle domain in Argonaute homologs › Piwi | 0.50 | 37.0 | 3.19e-01 | 78.1% | 64.1% |
D2
medium
residues 106-229
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tjoB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 38.0 | 3.43e-01 | 100.0% | 52.6% |
| 4cybD00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 41.0 | 3.76e-01 | 100.0% | 60.8% |