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LSDeep1_scaffold_41_prodigal-single.1__X__X__00348
Bact-VirLSDeep1_scaffold_41_prodigal-single.1__X__X__00348
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 184-368
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1cunA01 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 25.0 | 3.35e-01 | 72.4% | 64.7% |
| 2qgmA03 | 1.20.1440.30 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain | 0.65 | 38.0 | 4.65e-01 | 74.1% | 91.4% |
| 2juaA00 | 1.20.1480.30 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › Designed four-helix bundle protein | 0.61 | 35.0 | 4.47e-01 | 70.8% | 100.0% |
| 2rldA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.60 | 37.0 | 4.60e-01 | 70.3% | 100.0% |
| 4p9fA02 | 1.20.120.530 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › GntR ligand-binding domain-like | 0.57 | 31.0 | 3.43e-01 | 70.8% | 63.9% |
| 1tjoB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.55 | 36.0 | 3.70e-01 | 74.1% | 68.0% |
| 6e1kA01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.54 | 32.0 | 4.04e-01 | 99.5% | 97.3% |
| 3frrA00 | 1.20.1260.60 | Mainly Alpha › Up-down Bundle › Ferritin › Vacuolar protein sorting-associated protein Ist1 | 0.54 | 36.0 | 3.65e-01 | 100.0% | 67.2% |
| 8ex5A02 | 1.20.1250.20 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › MFS general substrate transporter like domains | 0.54 | 37.0 | 3.53e-01 | 70.3% | 92.3% |
| 2jbrA03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.54 | 39.0 | 3.98e-01 | 75.7% | 100.0% |
| 2rfqC03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 37.0 | 3.87e-01 | 72.4% | 89.7% |
| 8hk0B03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.53 | 36.0 | 4.12e-01 | 70.3% | 95.7% |
| 2ib0A01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.51 | 30.0 | 3.47e-01 | 73.5% | 77.8% |
| 5zbqA01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 41.0 | 3.53e-01 | 84.3% | 67.0% |
| 2or0A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.51 | 38.0 | 3.87e-01 | 77.3% | 98.9% |
| 1xrsA00 | 3.20.20.440 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › D-Lysine 5,6-aminomutase alpha subunit | 0.50 | 39.0 | 2.87e-01 | 80.0% | 80.2% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4091420 | 5069.1.1.15 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm | 0.69 | 34.0 | 3.83e-01 | 83.8% | 60.0% |
| 5006651 | 4025.1.1.2 ↗ | alpha complex topology › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › alpha-helical domain in nickel-iron hydrogenase, large subunit › NiFeSe_Hases | 0.63 | 45.0 | 3.88e-01 | 73.0% | 95.1% |
| 3826025 | 3930.1.1.0 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase | 0.60 | 45.0 | 4.98e-01 | 100.0% | 98.6% |
| 3789439 | 603.1.1.222 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Rbsn | 0.56 | 27.0 | 2.77e-01 | 75.1% | 44.4% |
| 3207621 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.55 | 38.0 | 4.24e-01 | 73.0% | 89.3% |
| 3421505 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.54 | 40.0 | 4.17e-01 | 75.1% | 90.0% |
| 3707921 | 633.21.1.0 ↗ | alpha bundles › Bromodomain-like › Uncharacterized protein PA2107 › Uncharacterized protein PA2107 | 0.53 | 32.0 | 4.08e-01 | 95.7% | 100.0% |
| 3474709 | 133.1.1.1 ↗ | alpha bundles › DH domain-like › DBL homology domain (DH-domain) › DBL homology domain (DH-domain) › RhoGEF | 0.52 | 38.0 | 3.60e-01 | 75.1% | 80.5% |
| 3411214 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 36.0 | 3.21e-01 | 72.4% | 84.4% |
| 3218104 | 601.1.2.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) | 0.51 | 34.0 | 4.03e-01 | 89.2% | 99.2% |
| 3424235 | 109.2.1.3 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Glyco_hydro_9 | 0.50 | 38.0 | 2.82e-01 | 78.4% | 67.1% |
| 3371460 | 604.5.1.7 ↗ | alpha bundles › Spectrin repeat-like › PhoU-like (Pfam 01895) › PhoU-like (Pfam 01895) › ALMT | 0.50 | 33.0 | 3.05e-01 | 73.0% | 49.6% |
D2
medium
residues 1-94
Domain cluster:
rep: MW735835.1__QTH80263.1__PA10_00063__00063__D1-78
CATH (70)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4r30A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.71 | 64.0 | 5.17e-01 | 100.0% | 86.0% |
| 1jbwA02 | 3.90.190.20 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Mur ligase, C-terminal domain | 0.71 | 63.0 | 5.94e-01 | 98.9% | 98.2% |
| 2zm5B01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 61.0 | 4.54e-01 | 94.7% | 47.8% |
| 4d3pA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.70 | 63.0 | 5.46e-01 | 100.0% | 91.8% |
| 1zzwA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.70 | 63.0 | 5.42e-01 | 100.0% | 93.9% |
| 2f46A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.70 | 63.0 | 5.48e-01 | 100.0% | 97.2% |
| 3a8tA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.70 | 60.0 | 4.90e-01 | 95.7% | 63.5% |
| 2imgA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.70 | 62.0 | 5.36e-01 | 100.0% | 90.6% |
| 3d3qA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 60.0 | 5.09e-01 | 95.7% | 72.1% |
| 2p4dA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.69 | 62.0 | 5.16e-01 | 100.0% | 62.0% |
| 7ncyB01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.69 | 62.0 | 5.73e-01 | 100.0% | 84.3% |
| 3lxqA02 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.68 | 58.0 | 4.15e-01 | 94.7% | 70.0% |
| 3crmA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.68 | 59.0 | 5.04e-01 | 95.7% | 73.0% |
| 2esbA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.68 | 61.0 | 5.13e-01 | 100.0% | 84.0% |
| 5ji5A00 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.68 | 60.0 | 4.25e-01 | 100.0% | 99.3% |
| 3nywD00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.68 | 57.0 | 4.43e-01 | 93.6% | 55.4% |
| 3n0aA01 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.68 | 60.0 | 4.89e-01 | 100.0% | 76.8% |
| 3lkbA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.67 | 55.0 | 4.54e-01 | 88.3% | 55.1% |
| 5kivA01 | 3.40.220.10 | Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 | 0.67 | 59.0 | 4.72e-01 | 97.9% | 97.4% |
| 3eyeA00 | 3.40.35.10 | Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component | 0.67 | 57.0 | 4.88e-01 | 93.6% | 88.2% |
| 3d4iB01 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.67 | 58.0 | 4.32e-01 | 95.7% | 86.1% |
| 6abiA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.67 | 46.0 | 4.09e-01 | 80.9% | 49.6% |
| 3h11A00 | 3.40.50.1460 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.67 | 51.0 | 3.90e-01 | 80.9% | 42.0% |
| 3fjyA02 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.66 | 55.0 | 4.61e-01 | 94.7% | 93.0% |
| 3c7tA01 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.66 | 57.0 | 4.25e-01 | 95.7% | 89.1% |
| 7yjmB01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.65 | 52.0 | 3.88e-01 | 86.2% | 40.2% |
| 6m5nA00 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.65 | 55.0 | 4.08e-01 | 94.7% | 47.5% |
| 3imkA00 | 3.40.50.450 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.65 | 56.0 | 4.74e-01 | 95.7% | 96.8% |
| 3eafA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.64 | 51.0 | 4.20e-01 | 87.2% | 54.8% |
| 2yv4A00 | 3.40.50.11030 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Threonylcarbamoyl-AMP synthase, C-terminal domain | 0.64 | 55.0 | 5.37e-01 | 93.6% | 92.2% |
| 3gdwB00 | 3.40.50.510 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component | 0.64 | 48.0 | 4.31e-01 | 80.9% | 59.4% |
| 1vpqA00 | 3.20.20.410 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Protein of unknown function UPF0759 | 0.64 | 55.0 | 4.00e-01 | 94.7% | 100.0% |
| 2j16A00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.63 | 57.0 | 5.07e-01 | 100.0% | 89.5% |
| 5tcdA01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.63 | 54.0 | 3.85e-01 | 94.7% | 70.4% |
| 6c5cA01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 49.0 | 4.05e-01 | 86.2% | 78.6% |
| 3nutC01 | 3.40.1010.10 | Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › Tetrapyrrole methylase, N-terminal domain | 0.63 | 54.0 | 5.11e-01 | 95.7% | 86.8% |
| 3ajeA02 | 3.40.50.11030 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Threonylcarbamoyl-AMP synthase, C-terminal domain | 0.63 | 55.0 | 5.14e-01 | 96.8% | 81.9% |
| 4wd3A01 | 3.40.50.20 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.63 | 53.0 | 4.92e-01 | 93.6% | 78.3% |
| 5t5dA00 | 3.40.35.10 | Alpha Beta › 3-Layer(aba) Sandwich › Fructose Permease › Phosphotransferase system, sorbose subfamily IIB component | 0.63 | 53.0 | 4.61e-01 | 94.7% | 64.7% |
| 4kv7A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.63 | 48.0 | 3.67e-01 | 80.9% | 41.0% |
| 1r6hA00 | 3.90.190.10 | Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily | 0.62 | 55.0 | 4.55e-01 | 100.0% | 80.8% |
| 2hsjD00 | 3.40.50.1110 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › SGNH hydrolase | 0.62 | 46.0 | 3.62e-01 | 79.8% | 36.9% |
| 2wjwA02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.62 | 49.0 | 4.14e-01 | 87.2% | 57.1% |
| 3a2bA02 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.62 | 50.0 | 3.72e-01 | 87.2% | 35.7% |
| 1i6pA00 | 3.40.1050.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-carbonic Anhydrase; Chain A › Carbonic anhydrase | 0.62 | 46.0 | 3.56e-01 | 79.8% | 62.1% |
| 2i09A01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.61 | 52.0 | 3.75e-01 | 94.7% | 69.0% |
| 5ix8A01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.61 | 47.0 | 3.95e-01 | 81.9% | 52.8% |
| 2ht1A02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.61 | 54.0 | 4.13e-01 | 100.0% | 60.4% |
| 7q1bA01 | 3.40.800.20 | Alpha Beta › 3-Layer(aba) Sandwich › Arginase; Chain A › Histone deacetylase domain | 0.61 | 53.0 | 3.62e-01 | 100.0% | 57.2% |
| 1ujnA01 | 3.40.50.1970 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.61 | 48.0 | 4.06e-01 | 86.2% | 80.1% |
| 5heeA00 | 3.40.830.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protocatechuate 4,5-dioxygenase; Chain B › LigB-like | 0.61 | 51.0 | 3.78e-01 | 94.7% | 89.3% |
| 4b8wB01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.59 | 43.0 | 3.44e-01 | 77.7% | 63.2% |
| 1ofuX00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 50.0 | 4.72e-01 | 95.7% | 85.6% |
| 2pjuA02 | 3.40.50.10660 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › PrpR receptor domain-like | 0.59 | 45.0 | 4.69e-01 | 85.1% | 89.8% |
| 5agaA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 49.0 | 3.87e-01 | 94.7% | 100.0% |
| 2py6A03 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.58 | 51.0 | 4.20e-01 | 100.0% | 67.2% |
| 4ry8C02 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 45.0 | 3.85e-01 | 86.2% | 69.3% |
| 3h76A01 | 3.40.47.10 | Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase | 0.57 | 46.0 | 3.86e-01 | 89.4% | 94.3% |
| 2z0mA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.57 | 49.0 | 4.02e-01 | 100.0% | 80.6% |
| 1gdhA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.57 | 40.0 | 3.72e-01 | 75.5% | 93.0% |
| 2d4oA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.56 | 40.0 | 3.66e-01 | 74.5% | 75.2% |
| 2z1dA01 | 3.40.50.11750 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HypD, alpha/beta domain 1 | 0.56 | 44.0 | 3.90e-01 | 85.1% | 61.0% |
| 4u63A01 | 3.40.50.620 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs | 0.56 | 48.0 | 3.95e-01 | 95.7% | 66.1% |
| 1isiA02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.56 | 41.0 | 3.81e-01 | 80.9% | 68.8% |
| 1a99A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.54 | 37.0 | 3.21e-01 | 80.9% | 40.7% |
| 5c0oH00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.54 | 46.0 | 3.66e-01 | 100.0% | 80.6% |
| 1qhxA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 45.0 | 3.68e-01 | 95.7% | 60.1% |
| 4j8lA01 | 3.40.640.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) | 0.52 | 45.0 | 3.42e-01 | 98.9% | 51.8% |
| 6dtuA01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 37.0 | 3.06e-01 | 80.9% | 38.0% |
| 3ldhA01 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.51 | 42.0 | 3.65e-01 | 94.7% | 82.1% |
ECOD (70)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4989109 | 2004.1.1.88 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW | 0.73 | 63.0 | 4.86e-01 | 94.7% | 51.2% |
| 4977588 | 2007.2.3.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTP-SAK | 0.72 | 64.0 | 5.58e-01 | 100.0% | 93.1% |
| 5071477 | 2007.2.3.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTP-SAK | 0.72 | 65.0 | 5.41e-01 | 100.0% | 84.4% |
| 4948530 | 2007.2.3.12 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Tc-R-P | 0.71 | 64.0 | 5.45e-01 | 100.0% | 89.3% |
| 4025383 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.71 | 64.0 | 5.40e-01 | 100.0% | 87.7% |
| 165135 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.70 | 63.0 | 5.13e-01 | 100.0% | 78.0% |
| None | — | 0.70 | 63.0 | 4.98e-01 | 100.0% | 57.9% | |
| None | — | 0.70 | 61.0 | 4.41e-01 | 95.7% | 49.0% | |
| 3464967 | 2004.1.1.71 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPPT | 0.70 | 61.0 | 4.62e-01 | 95.7% | 51.4% |
| 5002019 | 2004.1.1.88 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW | 0.70 | 60.0 | 4.48e-01 | 94.7% | 45.5% |
| 3938070 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.70 | 62.0 | 4.97e-01 | 100.0% | 59.5% |
| 3491590 | 2007.2.3.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTP-SAK | 0.70 | 62.0 | 5.42e-01 | 100.0% | 92.4% |
| None | — | 0.70 | 60.0 | 4.46e-01 | 94.7% | 47.7% | |
| 3908055 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.69 | 62.0 | 5.21e-01 | 100.0% | 86.3% |
| 3478439 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.69 | 62.0 | 4.80e-01 | 100.0% | 54.5% |
| 4931119 | 2004.1.1.88 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW | 0.69 | 59.0 | 4.70e-01 | 95.7% | 54.8% |
| 3660088 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.69 | 62.0 | 4.98e-01 | 100.0% | 74.1% |
| 3596186 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.69 | 62.0 | 5.16e-01 | 100.0% | 83.6% |
| 4928739 | 2007.2.3.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTP-SAK | 0.69 | 62.0 | 5.16e-01 | 100.0% | 81.8% |
| 3966269 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.69 | 59.0 | 4.35e-01 | 95.7% | 50.4% |
| 5002555 | 2004.1.1.88 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW | 0.69 | 56.0 | 4.47e-01 | 88.3% | 49.7% |
| 3190462 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.69 | 61.0 | 4.72e-01 | 100.0% | 80.0% |
| 4124748 | 2004.1.1.71 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPPT | 0.69 | 59.0 | 4.20e-01 | 94.7% | 39.4% |
| 3170000 | 2004.1.1.103 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sua5_C | 0.69 | 59.0 | 5.27e-01 | 95.7% | 93.3% |
| 5049258 | 2007.2.3.12 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Tc-R-P | 0.68 | 61.0 | 5.37e-01 | 100.0% | 97.1% |
| 4030756 | 2004.1.1.88 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW | 0.68 | 59.0 | 4.57e-01 | 95.7% | 51.0% |
| 4530118 | 2004.1.1.71 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › IPPT | 0.68 | 58.0 | 4.43e-01 | 94.7% | 48.9% |
| 4999878 | 2007.3.1.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Succinyl-CoA synthetase domains › Succinyl-CoA synthetase domains | 0.68 | 52.0 | 4.11e-01 | 80.9% | 45.3% |
| 3927668 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.68 | 54.0 | 4.17e-01 | 86.2% | 47.0% |
| 4031134 | 2004.1.1.88 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW | 0.68 | 58.0 | 4.52e-01 | 94.7% | 50.5% |
| 3259992 | 2007.2.3.6 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › CDKN3 | 0.68 | 60.0 | 5.10e-01 | 100.0% | 89.4% |
| None | — | 0.68 | 61.0 | 5.02e-01 | 100.0% | 67.6% | |
| None | — | 0.68 | 60.0 | 4.75e-01 | 100.0% | 80.5% | |
| 3705962 | 2007.2.3.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTP-SAK | 0.68 | 60.0 | 4.65e-01 | 100.0% | 74.9% |
| 3939337 | 2007.2.3.12 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Tc-R-P | 0.68 | 61.0 | 4.42e-01 | 100.0% | 59.2% |
| None | — | 0.68 | 60.0 | 5.11e-01 | 100.0% | 92.9% | |
| 4061299 | 3949.1.1.1 ↗ | alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT | 0.68 | 58.0 | 4.36e-01 | 95.7% | 49.4% |
| 3630112 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.68 | 60.0 | 4.81e-01 | 100.0% | 71.6% |
| 3390077 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.68 | 55.0 | 4.58e-01 | 87.2% | 52.5% |
| 3742936 | 2007.2.3.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTP-SAK | 0.68 | 60.0 | 4.85e-01 | 100.0% | 83.8% |
| 5016446 | 2004.1.1.88 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › cobW | 0.67 | 57.0 | 4.45e-01 | 95.7% | 49.8% |
| 3364039 | 2007.2.3.2 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › DSPc | 0.67 | 59.0 | 4.87e-01 | 100.0% | 62.9% |
| 3188896 | 2007.2.3.11 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTP-SAK | 0.66 | 59.0 | 4.77e-01 | 100.0% | 85.9% |
| 3343676 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.66 | 53.0 | 5.12e-01 | 87.2% | 92.4% |
| 4991830 | 2004.1.1.146 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATPase | 0.66 | 56.0 | 4.46e-01 | 94.7% | 56.0% |
| 4880587 | 2007.2.3.12 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Tc-R-P | 0.66 | 59.0 | 5.01e-01 | 100.0% | 83.8% |
| 3834995 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.66 | 53.0 | 3.43e-01 | 86.2% | 22.4% |
| 2050733 | 2007.1.10.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › PrpR receptor domain-like › PrpR_N | 0.65 | 45.0 | 4.47e-01 | 80.9% | 69.1% |
| 3496213 | 2007.2.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II | 0.64 | 57.0 | 4.65e-01 | 100.0% | 65.6% |
| 4010473 | 7515.1.1.2 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Sulfatase | 0.64 | 55.0 | 3.80e-01 | 95.7% | 56.7% |
| 4995496 | 2004.1.1.103 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sua5_C | 0.64 | 55.0 | 5.46e-01 | 95.7% | 94.0% |
| 3589377 | 2010.1.1.3 ↗ | a/b three-layered sandwiches › EDD domain › EDD domain › EDD domain › EIIA-man | 0.63 | 48.0 | 4.32e-01 | 80.9% | 60.8% |
| 4417234 | 2004.1.1.162 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Rad51 | 0.63 | 54.0 | 4.16e-01 | 97.9% | 50.4% |
| 4117003 | 7550.1.1.1 ↗ | a/b three-layered sandwiches › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › Tetrapyrrole methylase N-terminal domain › TP_methylase | 0.63 | 53.0 | 5.04e-01 | 95.7% | 88.7% |
| 3585883 | 2007.1.2.4 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › ANF_receptor | 0.62 | 49.0 | 3.50e-01 | 86.2% | 30.5% |
| 5026753 | 4978.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in AF0625-like proteins › a/b domain in AF0625-like proteins › a/b domain in AF0625-like proteins › tRNA_deacylase | 0.62 | 46.0 | 4.75e-01 | 79.8% | 88.9% |
| None | — | 0.62 | 51.0 | 3.84e-01 | 93.6% | 46.9% | |
| 4167781 | 7591.1.1.1 ↗ | a/b three-layered sandwiches › Tetraacyldisaccharide 4'-kinase C-terminal domain › Tetraacyldisaccharide 4'-kinase C-terminal domain › Tetraacyldisaccharide 4'-kinase C-terminal domain › LpxK | 0.61 | 51.0 | 5.03e-01 | 100.0% | 87.0% |
| 4039970 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.60 | 47.0 | 3.39e-01 | 84.0% | 34.6% |
| 4192990 | 4978.1.1.1 ↗ | a/b three-layered sandwiches › a/b domain in AF0625-like proteins › a/b domain in AF0625-like proteins › a/b domain in AF0625-like proteins › tRNA_deacylase | 0.60 | 45.0 | 4.57e-01 | 80.9% | 82.1% |
| 3743556 | 2007.1.3.0 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like | 0.59 | 45.0 | 3.76e-01 | 81.9% | 49.1% |
| 4535526 | 2004.1.1.106 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RapZ-like_N | 0.59 | 43.0 | 3.66e-01 | 77.7% | 76.9% |
| 4982500 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.57 | 51.0 | 3.51e-01 | 100.0% | 51.3% |
| 4221017 | 2004.1.1.106 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RapZ-like_N | 0.56 | 41.0 | 3.42e-01 | 77.7% | 78.9% |
| 4221871 | 2004.1.1.41 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ADK | 0.54 | 46.0 | 3.37e-01 | 94.7% | 37.4% |
| 4385286 | 2484.1.1.153 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF1744 | 0.54 | 41.0 | 3.29e-01 | 80.9% | 66.2% |
| 4146436 | 7577.1.1.1 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 | 0.53 | 47.0 | 3.12e-01 | 100.0% | 40.0% |
| 3965890 | 7523.1.1.0 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II | 0.53 | 38.0 | 3.07e-01 | 93.6% | 36.4% |
| None | — | 0.53 | 45.0 | 3.22e-01 | 100.0% | 56.6% | |
| 4631194 | 2004.1.1.24 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SNF2-rel_dom,Helicase_C | 0.52 | 45.0 | 2.77e-01 | 100.0% | 18.6% |
D3
medium
residues 95-169
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3bt5A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.65 | 44.0 | 3.48e-01 | 70.7% | 76.8% |
| 2kckA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.56 | 31.0 | 2.71e-01 | 70.7% | 33.9% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4015450 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.69 | 47.0 | 4.90e-01 | 70.7% | 95.7% |
| 3702330 | 3826.1.1.0 ↗ | alpha bundles › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) › Copper-sensitive operon repressor (CsoR) | 0.59 | 42.0 | 4.37e-01 | 74.7% | 91.4% |