LSDeep1_scaffold_41_prodigal-single.1XX__00355

Bact-Vir

LSDeep1_scaffold_41_prodigal-single.1__X__X__00355

Identity

90.2 mean pLDDT

View cluster (3 members)

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high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 18-56_91-106

PDB

Domain cluster: representative

CATH (8)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1b8aA02	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.57	41.0	2.59e-01	78.2%	62.2%
2xgtA02	3.30.930.10	Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2	0.54	38.0	2.42e-01	76.4%	63.3%
1hslA02	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.53	44.0	3.76e-01	100.0%	69.3%
1l6wA00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.53	46.0	3.12e-01	100.0%	51.8%
4pfrA00	3.40.190.170	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Bacterial extracellular solute-binding protein, family 7	0.53	37.0	2.43e-01	100.0%	14.4%
4dzzA00	3.40.50.300	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases	0.53	44.0	3.04e-01	98.2%	49.0%
1w3iA00	3.20.20.70	Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I	0.52	45.0	2.86e-01	98.2%	48.1%
7ejgC01	3.40.190.10	Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II	0.51	41.0	3.56e-01	100.0%	65.3%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3386955	2002.1.1.97 ↗	a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › TMP-TENI	0.57	41.0	2.86e-01	81.8%	22.1%
4215299	7523.1.1.11 ↗	a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › VitK2_biosynth	0.53	38.0	2.63e-01	80.0%	60.0%

D2 medium residues 57-90_107-135

PDB

Domain cluster: representative

CATH (4)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4pg4A02	3.30.360.10	Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2	0.58	44.0	3.28e-01	81.0%	86.3%
2f8lA01	1.10.150.470	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 ›	0.58	39.0	3.63e-01	87.3%	55.6%
3s6pB01	1.20.1690.20	Mainly Alpha › Up-down Bundle › V-type ATP synthase subunit C fold ›	0.55	40.0	3.58e-01	93.7%	52.6%
3ousA00	1.10.287.70	Mainly Alpha › Orthogonal Bundle › Helix Hairpins ›	0.54	39.0	3.60e-01	88.9%	59.8%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3741782	101.1.1.0 ↗	alpha arrays › HTH › HTH › Three-helical HTH	0.57	40.0	3.41e-01	76.2%	57.4%
4968422	2006.1.1.18 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2	0.55	40.0	2.71e-01	77.8%	27.3%
3592099	108.1.1.0 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand	0.55	37.0	3.70e-01	95.2%	69.2%
4524416	5054.1.1.8 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2	0.53	39.0	3.25e-01	88.9%	46.7%
5044880	2006.1.1.18 ↗	a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2	0.52	39.0	2.67e-01	81.0%	41.1%
5009561	5054.1.1.0 ↗	alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels	0.52	39.0	3.54e-01	88.9%	60.0%