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LSDeep1_scaffold_41_prodigal-single.1__X__X__00434
Bact-VirLSDeep1_scaffold_41_prodigal-single.1__X__X__00434
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-110
Domain cluster:
rep: Salt_Pond_R2_restored_H2O_MG_scaffold_5_prodigal-single.1__X__X__00105__D2-107
CATH (15)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.65 | 37.0 | 4.51e-01 | 92.7% | 90.9% |
| 3v76A02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 33.0 | 3.56e-01 | 91.7% | 71.1% |
| 2v72A00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 37.0 | 3.43e-01 | 100.0% | 54.7% |
| 3qt2B03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 34.0 | 3.56e-01 | 100.0% | 70.4% |
| 3bpnC03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 36.0 | 3.74e-01 | 100.0% | 75.2% |
| 4iykA01 | 2.60.40.1120 | Mainly Beta › Sandwich › Immunoglobulin-like › Carboxypeptidase-like, regulatory domain | 0.53 | 29.0 | 3.10e-01 | 91.7% | 59.8% |
| 1bquA02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 36.0 | 3.62e-01 | 100.0% | 69.4% |
| 2yuxA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 34.0 | 3.50e-01 | 100.0% | 67.6% |
| 6grqA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 36.0 | 3.77e-01 | 100.0% | 78.8% |
| 2fqpA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 35.0 | 3.76e-01 | 100.0% | 81.1% |
| 3og6B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 34.0 | 3.56e-01 | 100.0% | 73.7% |
| 2n1kA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.51 | 32.0 | 3.33e-01 | 100.0% | 65.1% |
| 1hx6A02 | 2.60.120.20 | Mainly Beta › Sandwich › Jelly Rolls › | 0.51 | 39.0 | 3.67e-01 | 100.0% | 65.2% |
| 3gmgA00 | 3.30.70.1880 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 | 0.51 | 33.0 | 3.06e-01 | 100.0% | 51.0% |
| 5e55B02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 34.0 | 3.62e-01 | 100.0% | 80.6% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3269943 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.69 | 38.0 | 4.11e-01 | 99.1% | 63.2% |
| 4970989 | 211.1.1.0 ↗ | a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase | 0.62 | 31.0 | 3.84e-01 | 98.2% | 78.5% |
| 4942277 | 4261.1.1.0 ↗ | a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like | 0.58 | 33.0 | 3.77e-01 | 100.0% | 77.3% |
| 3891518 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.56 | 34.0 | 3.69e-01 | 100.0% | 70.5% |
| 3293992 | 12.1.1.35 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › Melibiase_C | 0.56 | 35.0 | 3.66e-01 | 100.0% | 68.0% |
| 4616082 | 4236.1.1.0 ↗ | few secondary structure elements › Sec-C motif › Sec-C motif › Sec-C motif | 0.56 | 24.0 | 3.54e-01 | 71.6% | 100.0% |
| 5031362 | 1.1.3.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin | 0.54 | 24.0 | 3.18e-01 | 74.3% | 75.0% |
| 3997587 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.54 | 34.0 | 3.76e-01 | 100.0% | 77.8% |
| 5037699 | 12.1.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain | 0.54 | 35.0 | 3.63e-01 | 100.0% | 71.0% |
| 3898049 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.53 | 34.0 | 3.75e-01 | 100.0% | 80.0% |
| 3949363 | 12.1.1.99 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain › T6SS_TssF | 0.52 | 43.0 | 4.07e-01 | 100.0% | 75.4% |
| 3626140 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.51 | 37.0 | 3.37e-01 | 100.0% | 54.7% |
| 274267 | 10.2.1.87 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › P3_C | 0.51 | 40.0 | 3.63e-01 | 100.0% | 60.9% |
| 3279452 | 1.1.7.27 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF1905 | 0.51 | 35.0 | 3.96e-01 | 100.0% | 98.8% |
| 3829995 | 390.1.1.1 ↗ | few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like › PAN_1 | 0.50 | 34.0 | 3.90e-01 | 100.0% | 91.7% |