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LSDeep1_scaffold_41_prodigal-single.1__X__X__00440
Bact-VirLSDeep1_scaffold_41_prodigal-single.1__X__X__00440
Identity
- Kingdom:
- phage
Quality
73.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 183-268
Domain cluster:
rep: OV032902.1__CAH0447963.1__SM033_00139__00139__D168-264
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1qexA02 | 2.60.120.640 | Mainly Beta › Sandwich › Jelly Rolls › gp9 | 0.84 | 77.0 | 7.25e-01 | 100.0% | 93.2% |
| 6o38A01 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.78 | 72.0 | 7.08e-01 | 100.0% | 97.8% |
| 6o38A04 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.78 | 70.0 | 6.93e-01 | 100.0% | 93.3% |
| 6o38A02 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.76 | 70.0 | 6.85e-01 | 100.0% | 96.7% |
| 6o38A03 | 2.60.120.1230 | Mainly Beta › Sandwich › Jelly Rolls › | 0.74 | 66.0 | 6.73e-01 | 96.5% | 98.8% |
| 3d2lC01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.64 | 46.0 | 3.64e-01 | 75.6% | 82.0% |
| 1hf2A02 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.62 | 50.0 | 4.73e-01 | 100.0% | 73.6% |
| 3eqnA01 | 2.160.20.10 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › Single-stranded right-handed beta-helix, Pectin lyase-like | 0.61 | 54.0 | 3.63e-01 | 100.0% | 32.2% |
| 6evgA01 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.60 | 48.0 | 4.18e-01 | 87.2% | 73.5% |
| 4v02C00 | 2.160.20.70 | Mainly Beta › 3 Solenoid › Pectate Lyase C-like › | 0.58 | 48.0 | 4.35e-01 | 100.0% | 66.4% |
| 1ig0A02 | 2.60.120.320 | Mainly Beta › Sandwich › Jelly Rolls › Thiamin pyrophosphokinase, thiamin-binding domain | 0.57 | 43.0 | 3.83e-01 | 81.4% | 73.8% |
| 3duwA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.57 | 42.0 | 3.18e-01 | 79.1% | 74.0% |
| 1sfpA00 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.57 | 48.0 | 4.48e-01 | 100.0% | 77.5% |
| 3ccfA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 47.0 | 3.50e-01 | 94.2% | 91.2% |
| 3tmaA02 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.56 | 48.0 | 3.84e-01 | 96.5% | 80.2% |
| 3mq2A00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.55 | 47.0 | 3.56e-01 | 96.5% | 87.0% |
| 1ikoP00 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.52 | 40.0 | 3.52e-01 | 86.0% | 75.9% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 184462 | 520.1.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › gp9 N-terminal domain-related › gp9 N-terminal domain-related › T4_gp9_10 | 0.84 | 77.0 | 6.08e-01 | 100.0% | 57.1% |
| 2581337 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.78 | 72.0 | 7.05e-01 | 100.0% | 96.8% |
| 2581340 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.77 | 70.0 | 7.04e-01 | 100.0% | 96.6% |
| 2581339 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.77 | 71.0 | 6.91e-01 | 100.0% | 93.6% |
| 2581338 | 520.2.1.1 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE › StcE_b-sandwich | 0.76 | 70.0 | 6.74e-01 | 100.0% | 93.8% |
| 3942383 | 520.2.1.0 ↗ | beta sandwiches › gp9 N-terminal domain-like › beta-sandwich domain in metalloprotease stcE › beta-sandwich domain in metalloprotease stcE | 0.70 | 63.0 | 6.23e-01 | 100.0% | 95.6% |
| 4158659 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.68 | 60.0 | 4.27e-01 | 100.0% | 60.7% |
| 4092984 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.68 | 60.0 | 4.33e-01 | 100.0% | 61.2% |
| 4179400 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.66 | 58.0 | 4.06e-01 | 100.0% | 55.9% |
| 3289663 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.65 | 57.0 | 4.34e-01 | 100.0% | 67.3% |
| 4394964 | 207.11.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD | 0.64 | 56.0 | 4.08e-01 | 100.0% | 63.1% |
| 7233 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.62 | 50.0 | 4.72e-01 | 100.0% | 72.9% |
| 4472803 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.62 | 49.0 | 4.72e-01 | 100.0% | 76.0% |
| 3963299 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.60 | 51.0 | 4.77e-01 | 100.0% | 75.5% |
| 4475590 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.59 | 50.0 | 4.70e-01 | 100.0% | 77.1% |
| 4493843 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.59 | 49.0 | 4.68e-01 | 100.0% | 77.1% |
| 4420723 | 1160.1.1.1 ↗ | beta duplicates or obligate multimers › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain › TGFBR3_N | 0.58 | 45.0 | 3.95e-01 | 84.9% | 57.7% |
| 4028865 | 255.1.1.1 ↗ | a+b complex topology › LCCL domain › LCCL domain › LCCL domain › LCCL | 0.58 | 44.0 | 4.13e-01 | 83.7% | 95.5% |
| 4651440 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.58 | 48.0 | 4.51e-01 | 100.0% | 74.5% |
| 4330222 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.57 | 47.0 | 4.32e-01 | 100.0% | 67.5% |
| 3365160 | 3156.1.1.20 ↗ | beta sandwiches › Cupredoxin-like › Cupredoxin-related › Cupredoxin-related › Cu-oxidase, Cu-oxidase_2, Cu-oxidase_3 | 0.56 | 46.0 | 3.10e-01 | 91.9% | 32.9% |
| 2156967 | 207.5.1.1 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Cell-division inhibitor MinC-C › Cell-division inhibitor MinC-C › MinC_C | 0.55 | 47.0 | 4.38e-01 | 100.0% | 74.8% |
| 3915156 | 1160.1.1.0 ↗ | beta duplicates or obligate multimers › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain › Endoglin orphan region (OR) domain | 0.55 | 44.0 | 3.85e-01 | 89.5% | 57.8% |
| 3444616 | 207.1.1.143 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_14, LRR_R13L1-DRL21 | 0.54 | 47.0 | 2.98e-01 | 100.0% | 19.8% |
| 3421120 | 207.1.1.0 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats | 0.53 | 45.0 | 3.51e-01 | 100.0% | 41.5% |
| 5038445 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.52 | 40.0 | 3.90e-01 | 97.7% | 75.8% |
| 3784898 | 207.1.1.45 ↗ | beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_4,LRR_8 | 0.52 | 45.0 | 2.84e-01 | 98.8% | 27.4% |
| 3178892 | 12.6.1.3 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related › Bac_rhamnosid_C | 0.51 | 41.0 | 4.08e-01 | 88.4% | 94.4% |
| 3485798 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 43.0 | 3.67e-01 | 95.3% | 92.7% |