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LSDeep1_scaffold_41_prodigal-single.1__X__X__00454

Bact-Vir

LSDeep1_scaffold_41_prodigal-single.1__X__X__00454

Identity

Kingdom:
phage

Quality

84.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-115
PDB
D2 high residues 133-194
PDB
Domain cluster: representative
CATH (54)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3goxA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.87 63.0 6.89e-01 100.0% 92.2%
4m4zA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.82 59.0 6.59e-01 98.4% 100.0%
1b7tA02 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.80 55.0 5.90e-01 100.0% 84.6%
2d9tA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 56.0 6.20e-01 100.0% 95.9%
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 53.0 5.74e-01 100.0% 86.3%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 61.0 6.26e-01 100.0% 91.5%
1x6gA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.75 62.0 5.68e-01 100.0% 69.1%
6vlfA03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 60.0 6.21e-01 100.0% 94.8%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.74 59.0 5.84e-01 100.0% 84.4%
2v1qA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 60.0 6.09e-01 100.0% 93.3%
4fssB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 59.0 6.02e-01 100.0% 91.8%
1gcqB00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 56.0 5.81e-01 100.0% 93.0%
2vgeA00 1.25.40.20 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Ankyrin repeat-containing domain 0.72 59.0 4.06e-01 100.0% 27.1%
2kxcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 60.0 5.88e-01 100.0% 85.1%
2eczA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 57.0 5.51e-01 100.0% 78.6%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 57.0 5.88e-01 100.0% 93.2%
1khcA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.70 54.0 5.37e-01 100.0% 80.0%
2e5kA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 59.0 5.85e-01 100.0% 92.2%
7z0kB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 58.0 5.76e-01 100.0% 90.6%
1wfwA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.69 58.0 5.51e-01 100.0% 79.7%
2yrvA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 56.0 4.51e-01 100.0% 47.8%
3o2zP00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 50.0 4.12e-01 79.0% 75.9%
1k1zA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 62.0 5.71e-01 100.0% 79.5%
4iupA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 56.0 5.37e-01 100.0% 77.8%
1zuuA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.68 54.0 5.67e-01 98.4% 98.2%
8jx6A02 2.30.30.780 Mainly Beta › Roll › SH3 type barrels. › 0.66 56.0 4.84e-01 98.4% 100.0%
1mv3A01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.66 58.0 5.48e-01 100.0% 91.9%
4epcA02 2.30.30.170 Mainly Beta › Roll › SH3 type barrels. › 0.65 57.0 5.47e-01 100.0% 91.5%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.62 46.0 4.81e-01 95.2% 91.1%
1dz1A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.61 46.0 4.43e-01 90.3% 71.4%
7u32F02 2.30.30.10 Mainly Beta › Roll › SH3 type barrels. › Integrase, C-terminal domain superfamily, retroviral 0.61 44.0 4.68e-01 100.0% 96.1%
3npfA02 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 52.0 5.08e-01 100.0% 88.6%
4c0fC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.60 47.0 3.96e-01 100.0% 49.1%
3q5zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 53.0 4.23e-01 100.0% 66.1%
2w1zA02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 53.0 4.04e-01 100.0% 67.4%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 49.0 4.60e-01 100.0% 77.3%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.58 44.0 4.46e-01 100.0% 84.1%
4c0dC00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.57 44.0 3.44e-01 100.0% 38.0%
4c0dB00 2.30.30.1020 Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain 0.56 44.0 3.22e-01 100.0% 29.8%
5w7tA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 49.0 4.19e-01 98.4% 90.7%
4o38A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 47.0 4.08e-01 96.8% 93.8%
4c57B00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.54 47.0 3.02e-01 98.4% 29.5%
4k00A00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 44.0 3.45e-01 91.9% 74.5%
5l37C00 2.40.50.220 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › EutN/Ccml 0.53 42.0 3.83e-01 88.7% 88.4%
5is8A02 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.53 41.0 2.93e-01 87.1% 45.2%
3d9wA02 2.40.128.150 Mainly Beta › Beta Barrel › Lipocalin › Cysteine proteinases 0.52 44.0 3.86e-01 100.0% 97.1%
4bfmA00 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.52 46.0 2.89e-01 98.4% 25.9%
1x0tA02 6.20.50.20 Special › Other non-globular › N-terminal domain of TfIIb › 0.51 34.0 3.73e-01 88.7% 97.8%
4fg9A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 44.0 4.04e-01 95.2% 88.6%
3vwaA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.51 44.0 3.94e-01 98.4% 87.8%
1fhoA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 40.0 3.40e-01 95.2% 79.8%
1i2mB00 2.130.10.30 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II 0.51 40.0 2.58e-01 95.2% 99.0%
2yj6A02 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.50 37.0 3.24e-01 79.0% 86.3%
4eqmA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 45.0 3.97e-01 98.4% 91.0%
ECOD (62)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3584364 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 57.0 6.30e-01 100.0% 90.0%
4306285 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.77 59.0 5.64e-01 100.0% 71.4%
3482868 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.76 62.0 6.49e-01 100.0% 98.2%
3259841 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 67.0 6.42e-01 100.0% 88.6%
3408588 4.1.1.243 beta barrels › SH3 › SH3 › SH3 › SH3_Myosin-XVIIIa 0.75 55.0 5.34e-01 100.0% 70.0%
3750522 4.1.1.218 beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.75 59.0 4.84e-01 100.0% 48.2%
4082863 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.74 61.0 5.84e-01 100.0% 78.6%
3642524 108.1.1.96 alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_1, EF-hand_6, EF-hand_7 0.74 42.0 3.35e-01 91.9% 28.0%
3557649 4.8.1.20 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.74 58.0 4.85e-01 100.0% 50.5%
3474075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 63.0 5.98e-01 100.0% 79.7%
3484618 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.73 60.0 5.66e-01 100.0% 74.7%
3879172 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.73 61.0 6.02e-01 100.0% 87.7%
3578855 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 56.0 5.19e-01 96.8% 65.0%
3749194 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.73 58.0 5.83e-01 100.0% 84.4%
3791430 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 56.0 5.88e-01 96.8% 94.5%
3585214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 47.0 4.04e-01 95.2% 42.0%
3978997 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.72 53.0 4.66e-01 100.0% 52.6%
5079023 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 46.0 5.16e-01 96.8% 91.1%
3797477 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 62.0 6.11e-01 100.0% 92.3%
3869065 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.71 63.0 5.37e-01 100.0% 64.0%
4335022 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 62.0 5.41e-01 100.0% 67.4%
3739064 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 56.0 5.59e-01 100.0% 83.1%
3519380 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 63.0 5.76e-01 100.0% 80.0%
4000391 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.70 43.0 2.74e-01 95.2% 12.8%
3609256 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 59.0 5.24e-01 100.0% 67.1%
3245735 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 59.0 4.76e-01 100.0% 50.4%
3283097 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.69 52.0 4.32e-01 100.0% 46.4%
4207556 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.68 59.0 5.73e-01 100.0% 95.7%
3942912 4.1.1.323 beta barrels › SH3 › SH3 › SH3 › WYL 0.68 54.0 4.90e-01 100.0% 63.5%
4976092 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 54.0 4.80e-01 100.0% 60.0%
3481726 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 54.0 5.55e-01 96.8% 91.7%
3451173 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 51.0 4.52e-01 100.0% 56.7%
3934278 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 55.0 4.48e-01 100.0% 48.7%
3221547 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 60.0 5.51e-01 100.0% 77.5%
3059317 4.1.1.116 beta barrels › SH3 › SH3 › SH3 › SH3_14 0.67 58.0 4.81e-01 100.0% 92.9%
3931161 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 55.0 4.47e-01 100.0% 49.6%
3763497 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.66 59.0 5.57e-01 100.0% 82.7%
4084890 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 57.0 5.70e-01 100.0% 100.0%
3784770 4.8.1.0 beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.65 58.0 5.48e-01 100.0% 86.7%
3693741 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 58.0 5.60e-01 100.0% 89.9%
3698757 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 57.0 4.85e-01 100.0% 62.0%
513 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 56.0 5.47e-01 100.0% 89.9%
3840076 4.1.1.58 beta barrels › SH3 › SH3 › SH3 › SH3_3 0.63 53.0 5.39e-01 98.4% 98.3%
3787175 4.1.1.12 beta barrels › SH3 › SH3 › SH3 › PWWP 0.62 55.0 4.41e-01 100.0% 62.4%
3585452 4.1.1.334 beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.62 54.0 5.24e-01 100.0% 88.6%
5032461 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 49.0 4.83e-01 100.0% 83.1%
3281618 4.31.1.1 beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.61 55.0 4.66e-01 100.0% 62.0%
1108456 4.1.1.41 beta barrels › SH3 › SH3 › SH3 › NOT2_3_5_C 0.60 47.0 4.00e-01 100.0% 50.9%
3736784 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.60 53.0 4.27e-01 100.0% 70.8%
3637870 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 52.0 4.73e-01 100.0% 72.9%
3717497 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 43.0 4.29e-01 90.3% 76.6%
3277727 4.8.1.43 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RNHCP 0.56 45.0 3.97e-01 98.4% 60.0%
4081276 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.55 44.0 3.28e-01 90.3% 63.0%
3540091 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.54 47.0 2.95e-01 98.4% 23.9%
3702818 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 41.0 2.59e-01 80.6% 87.9%
4491556 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.54 43.0 3.13e-01 90.3% 53.7%
3210522 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.53 44.0 3.16e-01 91.9% 56.8%
3853342 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.53 46.0 2.61e-01 98.4% 12.8%
5027812 375.1.1.5 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Ribosomal_L44 0.52 43.0 3.84e-01 95.2% 84.9%
3191989 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.52 42.0 3.35e-01 95.2% 71.0%
4016210 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.51 42.0 3.13e-01 91.9% 63.6%
5060010 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.51 33.0 3.61e-01 90.3% 93.3%