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LSDeep1_scaffold_41_prodigal-single.1__X__X__00460
Bact-VirLSDeep1_scaffold_41_prodigal-single.1__X__X__00460
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 2-43
Domain cluster:
representative
CATH (42)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4pofA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.70 | 57.0 | 5.55e-01 | 100.0% | 94.0% |
| 2ed8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.70 | 57.0 | 4.60e-01 | 100.0% | 46.5% |
| 3ir9A02 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.70 | 58.0 | 4.32e-01 | 100.0% | 36.7% |
| 3mfiA04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.70 | 58.0 | 4.30e-01 | 100.0% | 55.5% |
| 3bpnC03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.70 | 60.0 | 4.57e-01 | 100.0% | 46.5% |
| 3axsA01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.68 | 52.0 | 3.18e-01 | 100.0% | 12.1% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.68 | 56.0 | 4.99e-01 | 100.0% | 66.7% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.68 | 58.0 | 3.89e-01 | 100.0% | 30.5% |
| 1f94A00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.67 | 50.0 | 4.45e-01 | 100.0% | 55.6% |
| 4me3A03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.67 | 54.0 | 5.13e-01 | 100.0% | 94.5% |
| 1ltlA03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.67 | 53.0 | 5.22e-01 | 100.0% | 93.9% |
| 3d4rE01 | 2.40.128.400 | Mainly Beta › Beta Barrel › Lipocalin › | 0.67 | 45.0 | 3.70e-01 | 100.0% | 35.7% |
| 1ci0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.66 | 55.0 | 3.61e-01 | 100.0% | 26.0% |
| 3in6A02 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.66 | 56.0 | 4.13e-01 | 100.0% | 44.4% |
| 4iauA01 | 2.60.20.10 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › Crystallins | 0.64 | 45.0 | 3.80e-01 | 100.0% | 42.3% |
| 2i51B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.64 | 53.0 | 3.53e-01 | 100.0% | 27.7% |
| 4u7cB04 | 3.30.1490.100 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain | 0.64 | 51.0 | 3.97e-01 | 100.0% | 56.9% |
| 1dfxA00 | 2.60.40.730 | Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain | 0.62 | 46.0 | 3.43e-01 | 97.6% | 28.8% |
| 1vziA01 | 2.20.28.100 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › Desulphoferrodoxin, N-terminal domain | 0.62 | 46.0 | 4.69e-01 | 97.6% | 94.7% |
| 4kbxA01 | 2.40.37.30 | Mainly Beta › Beta Barrel › Lyase, Ornithine Decarboxylase; Chain A, domain 1 › | 0.62 | 51.0 | 3.29e-01 | 100.0% | 20.1% |
| 3dnhA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.62 | 51.0 | 3.60e-01 | 100.0% | 34.4% |
| 2r7eB03 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.61 | 48.0 | 3.48e-01 | 100.0% | 56.1% |
| 2ww8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 50.0 | 3.86e-01 | 100.0% | 39.6% |
| 4rdbA01 | 2.60.40.2580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.61 | 49.0 | 3.52e-01 | 100.0% | 35.6% |
| 2rftA02 | 3.90.209.20 | Alpha Beta › Alpha-Beta Complex › Hemagglutinin (Ha1 Chain); Chain: A; domain 1 › Haemagglutinin, alpha/beta domain, HA1 chain | 0.60 | 49.0 | 3.16e-01 | 100.0% | 37.2% |
| 1c77B00 | 3.10.20.130 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.60 | 49.0 | 3.60e-01 | 100.0% | 32.0% |
| 2j9uB00 | 2.30.30.380 | Mainly Beta › Roll › SH3 type barrels. › Zn-finger domain of Sec23/24 | 0.59 | 49.0 | 4.81e-01 | 95.2% | 100.0% |
| 2vl6A03 | 2.20.28.10 | Mainly Beta › Single Sheet › Rubrerythrin, domain 2 › | 0.59 | 45.0 | 4.45e-01 | 100.0% | 97.9% |
| 4iajA00 | 3.30.1490.390 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 | 0.59 | 48.0 | 4.11e-01 | 100.0% | 59.2% |
| 6b9tF01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.58 | 49.0 | 3.58e-01 | 100.0% | 45.6% |
| 4harA00 | 3.10.50.50 | Alpha Beta › Roll › Chitinase A; domain 3 › Rubella virus capsid protein | 0.55 | 47.0 | 3.68e-01 | 100.0% | 93.9% |
| 1hq0A00 | 3.60.100.10 | Alpha Beta › 4-Layer Sandwich › Cytotoxic necrotizing factor 1 (CNF1) › Cytotoxic necrotizing factor, Rho-activating domain | 0.55 | 45.0 | 2.77e-01 | 100.0% | 29.8% |
| 5h5oA00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.55 | 45.0 | 3.33e-01 | 100.0% | 34.4% |
| 7ylrA01 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.54 | 41.0 | 3.34e-01 | 100.0% | 70.5% |
| 4d6wA03 | 2.30.29.130 | Mainly Beta › Roll › PH-domain like › | 0.53 | 41.0 | 3.38e-01 | 95.2% | 82.1% |
| 1u1sA00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 44.0 | 3.91e-01 | 100.0% | 71.2% |
| 6z9cA01 | 2.60.40.1470 | Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain | 0.53 | 45.0 | 3.33e-01 | 100.0% | 74.6% |
| 3ng2B00 | 3.30.40.10 | Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) | 0.53 | 37.0 | 3.28e-01 | 78.6% | 47.8% |
| 3ujzA03 | 2.60.20.40 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › | 0.53 | 41.0 | 3.34e-01 | 100.0% | 42.0% |
| 4ev0D01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 43.0 | 3.11e-01 | 100.0% | 32.8% |
| 4lejA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 40.0 | 2.82e-01 | 100.0% | 70.2% |
| 2d7eA01 | 3.40.1440.60 | Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain | 0.51 | 40.0 | 3.24e-01 | 100.0% | 43.3% |
ECOD (55)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5028854 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.80 | 69.0 | 4.80e-01 | 100.0% | 31.7% |
| 3277720 | 375.1.1.185 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 | 0.78 | 62.0 | 6.33e-01 | 95.2% | 97.5% |
| 5016960 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.76 | 63.0 | 6.25e-01 | 100.0% | 100.0% |
| 4995774 | 375.1.1.185 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 | 0.75 | 58.0 | 5.89e-01 | 92.9% | 97.5% |
| 4956457 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.74 | 60.0 | 5.81e-01 | 100.0% | 90.0% |
| 3719741 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 59.0 | 5.60e-01 | 100.0% | 94.5% |
| 3187671 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 59.0 | 5.45e-01 | 100.0% | 86.7% |
| 5016177 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 60.0 | 5.83e-01 | 100.0% | 94.0% |
| 3602943 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 61.0 | 5.86e-01 | 100.0% | 90.0% |
| 3604642 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.73 | 59.0 | 5.89e-01 | 100.0% | 95.6% |
| 2640865 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 59.0 | 5.56e-01 | 100.0% | 94.5% |
| 4929321 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 57.0 | 5.21e-01 | 100.0% | 65.0% |
| 3244077 | 375.1.1.58 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB | 0.72 | 58.0 | 5.36e-01 | 100.0% | 86.7% |
| 5054307 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 60.0 | 5.93e-01 | 100.0% | 97.8% |
| 4994977 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.72 | 60.0 | 4.30e-01 | 100.0% | 31.3% |
| 4941241 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.72 | 61.0 | 5.86e-01 | 100.0% | 90.0% |
| 3278973 | 375.1.1.185 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_8 | 0.71 | 56.0 | 5.71e-01 | 92.9% | 97.5% |
| 4971396 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.71 | 59.0 | 5.53e-01 | 100.0% | 89.1% |
| 5033270 | 375.1.2.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Desulforedoxin | 0.71 | 51.0 | 5.41e-01 | 95.2% | 97.1% |
| 4241460 | 301.1.1.2 ↗ | a+b three layers › Bacillus chorismate mutase-like › L30e-like › L30e-like › eRF1_3 | 0.71 | 57.0 | 4.15e-01 | 100.0% | 30.4% |
| 4936454 | 375.1.1.58 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB | 0.70 | 58.0 | 5.44e-01 | 100.0% | 85.5% |
| 3432172 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 57.0 | 5.56e-01 | 100.0% | 96.0% |
| 5019693 | 375.1.1.58 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB | 0.70 | 58.0 | 5.58e-01 | 100.0% | 100.0% |
| 5026915 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.70 | 55.0 | 5.40e-01 | 100.0% | 94.0% |
| 4930203 | 375.1.1.58 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB | 0.69 | 57.0 | 5.38e-01 | 100.0% | 89.1% |
| 4928962 | 375.5.1.0 ↗ | few secondary structure elements › Rubredoxin-like › NOB1 zinc finger-like › NOB1 zinc finger-like | 0.69 | 55.0 | 5.05e-01 | 100.0% | 66.7% |
| 3719787 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 56.0 | 5.71e-01 | 100.0% | 100.0% |
| 3060767 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 55.0 | 5.32e-01 | 100.0% | 80.0% |
| 3507461 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 56.0 | 5.27e-01 | 100.0% | 92.7% |
| 4993851 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.69 | 56.0 | 5.55e-01 | 97.6% | 100.0% |
| 5082733 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 56.0 | 5.25e-01 | 100.0% | 92.7% |
| 4938218 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 56.0 | 5.41e-01 | 100.0% | 86.0% |
| 5076162 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.68 | 54.0 | 3.16e-01 | 100.0% | 10.3% |
| 4948014 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 55.0 | 5.36e-01 | 100.0% | 96.0% |
| 3318055 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 54.0 | 5.50e-01 | 92.9% | 97.5% |
| 3781930 | 375.1.1.58 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB | 0.68 | 56.0 | 4.97e-01 | 100.0% | 92.3% |
| 3809044 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.68 | 53.0 | 5.24e-01 | 97.6% | 86.7% |
| 4976096 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.67 | 53.0 | 3.17e-01 | 100.0% | 10.8% |
| 1281652 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 54.0 | 5.13e-01 | 100.0% | 94.5% |
| 5061451 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.67 | 55.0 | 5.16e-01 | 100.0% | 87.3% |
| 4946681 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.66 | 51.0 | 3.06e-01 | 100.0% | 10.3% |
| 3607898 | 375.1.1.58 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › MCM_OB | 0.65 | 52.0 | 4.93e-01 | 100.0% | 85.5% |
| 3645405 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.64 | 54.0 | 3.69e-01 | 100.0% | 33.8% |
| 4424001 | 101.1.9.83 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM | 0.63 | 48.0 | 3.70e-01 | 100.0% | 33.3% |
| 3881277 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.62 | 52.0 | 4.05e-01 | 100.0% | 52.0% |
| 5037654 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.62 | 49.0 | 4.88e-01 | 95.2% | 93.3% |
| 5027517 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.61 | 47.0 | 4.71e-01 | 95.2% | 95.6% |
| 4930718 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.60 | 48.0 | 2.87e-01 | 100.0% | 11.1% |
| 3588629 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.60 | 47.0 | 4.74e-01 | 100.0% | 93.0% |
| 4966853 | 375.1.1.324 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF1922 | 0.60 | 47.0 | 4.04e-01 | 100.0% | 75.0% |
| 3422075 | 101.1.9.83 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › TRM | 0.59 | 46.0 | 3.62e-01 | 100.0% | 47.8% |
| 3489248 | 375.1.1.45 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Mcm10 | 0.59 | 45.0 | 4.59e-01 | 97.6% | 95.0% |
| 3480424 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.59 | 44.0 | 4.53e-01 | 97.6% | 95.0% |
| 4440959 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.55 | 43.0 | 4.42e-01 | 92.9% | 100.0% |
| 3744003 | 2003.1.5.19 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › TRM | 0.55 | 42.0 | 3.00e-01 | 95.2% | 33.3% |