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LSDeep1_scaffold_41_prodigal-single.1__X__X__00499

Bact-Vir

LSDeep1_scaffold_41_prodigal-single.1__X__X__00499

Identity

Kingdom:
phage

Quality

77.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-50
PDB
Domain cluster: representative
D2 medium residues 51-147
PDB
Domain cluster: representative
CATH (34)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.68 41.0 5.01e-01 82.5% 96.7%
2gtlN02 2.40.128.620 Mainly Beta › Beta Barrel › Lipocalin › 0.64 54.0 4.44e-01 90.7% 60.0%
2amhA00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.58 42.0 3.38e-01 76.3% 87.7%
2bi0A01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.58 47.0 4.02e-01 85.6% 98.0%
3bf2A00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.57 42.0 3.89e-01 78.4% 77.6%
4j8tA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.57 46.0 4.22e-01 88.7% 89.1%
3b7cA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 4.20e-01 85.6% 95.0%
3uoaB02 2.60.40.3360 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 43.0 3.91e-01 83.5% 91.9%
1bp1A01 3.15.10.10 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › Bactericidal permeability-increasing protein; domain 1 0.56 43.0 3.57e-01 83.5% 77.8%
2n8xA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.56 41.0 3.46e-01 77.3% 61.4%
3hzpA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.56 45.0 4.15e-01 87.6% 89.0%
3e99A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 45.0 3.97e-01 89.7% 87.2%
4jhcB00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.55 41.0 3.37e-01 79.4% 76.9%
5nj5A01 3.30.2290.10 Alpha Beta › 2-Layer Sandwich › PmbA/TldD fold › PmbA/TldD superfamily 0.55 44.0 3.33e-01 85.6% 37.7%
2b1xB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 43.0 3.66e-01 85.6% 85.0%
3soyA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.55 42.0 3.81e-01 84.5% 85.9%
1vp2A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.55 41.0 3.33e-01 79.4% 86.8%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.55 49.0 4.41e-01 99.0% 97.0%
4inaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.55 39.0 3.18e-01 76.3% 95.9%
4ph8A00 2.60.40.2910 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 42.0 3.66e-01 83.5% 82.7%
2pn5A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.54 41.0 4.09e-01 83.5% 87.6%
3hn3A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 42.0 4.14e-01 83.5% 89.4%
2w4yA00 2.40.160.220 Mainly Beta › Beta Barrel › Porin › 0.52 35.0 3.24e-01 73.2% 54.1%
5hccB03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 41.0 3.82e-01 85.6% 93.4%
5ig0A00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 45.0 4.05e-01 93.8% 90.8%
7x4nE01 3.40.850.10 Alpha Beta › 3-Layer(aba) Sandwich › Kinesin › Kinesin motor domain 0.52 40.0 2.77e-01 81.4% 43.1%
2covG00 2.60.40.2450 Mainly Beta › Sandwich › Immunoglobulin-like › Beta-1,3-xylanase, CBM31 domain 0.52 39.0 4.11e-01 86.6% 88.6%
2b39A03 2.60.40.1940 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 40.0 3.76e-01 85.6% 87.2%
1wpuA00 3.40.1510.10 Alpha Beta › 3-Layer(aba) Sandwich › Hut operon positive regulatory protein HutP › Hut operon regulatory protein HutP 0.52 40.0 3.53e-01 85.6% 55.8%
4r7kA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 41.0 3.45e-01 88.7% 81.0%
4ak2A01 2.60.40.2720 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 40.0 3.78e-01 84.5% 70.9%
3mjkA00 2.10.90.10 Mainly Beta › Ribbon › Cystine Knot Cytokines, subunit B › Cystine-knot cytokines 0.50 39.0 3.59e-01 84.5% 62.8%
1b78A00 3.90.950.10 Alpha Beta › Alpha-Beta Complex › Maf protein › 0.50 37.0 3.10e-01 80.4% 87.0%
6gp1A00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.50 29.0 3.46e-01 81.4% 86.2%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3175625 9.3.1.0 beta barrels › Lipocalins/Streptavidin › Quinohemoprotein amine dehydrogenase A chain, domain 3-like › Quinohemoprotein amine dehydrogenase A chain, domain 3-like 0.63 52.0 4.15e-01 89.7% 72.0%
4169235 330.6.1.1 a+b two layers › dsRBD-like › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain › LeuA_dimer 0.62 38.0 3.56e-01 78.4% 48.8%
4556738 7503.1.1.1 a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › CsgG 0.60 46.0 3.43e-01 81.4% 70.5%
3459363 243.3.1.74 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › DUF1668 0.58 43.0 4.53e-01 80.4% 88.2%
3929627 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 42.0 4.26e-01 75.3% 94.7%
3667234 2007.2.3.3 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N 0.57 48.0 3.43e-01 92.8% 94.0%
5043164 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.57 44.0 3.38e-01 82.5% 74.3%
3707971 2007.2.3.3 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N 0.57 47.0 3.28e-01 91.8% 97.6%
5028249 5090.1.1.0 beta complex topology › Viral glycoprotein, central and dimerisation domains-like › Viral glycoprotein, central and dimerisation domains › Viral glycoprotein, central and dimerisation domains 0.57 45.0 4.29e-01 85.6% 71.9%
3307607 2007.2.3.3 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N 0.56 47.0 3.17e-01 91.8% 93.7%
3275766 2007.2.3.3 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N 0.56 46.0 3.24e-01 89.7% 97.8%
5018035 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 44.0 4.05e-01 84.5% 87.2%
5073160 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.56 44.0 4.00e-01 84.5% 66.9%
4945299 512.1.1.5 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_3rd 0.56 44.0 4.18e-01 86.6% 71.7%
4672222 4010.1.1.3 a+b complex topology › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › N-terminal domain in beta subunit of DNA dependent RNA-polymerase › RNA_pol_Rpb2_3 0.55 49.0 3.54e-01 96.9% 71.1%
3544378 11.1.1.414 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TMEM106 0.55 46.0 3.91e-01 88.7% 78.1%
4675848 9.2.1.1 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.55 49.0 4.38e-01 99.0% 93.5%
5042035 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.55 43.0 3.33e-01 83.5% 74.3%
5000965 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.55 38.0 3.92e-01 84.5% 76.7%
4995517 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.55 43.0 3.32e-01 84.5% 41.4%
5072620 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.54 43.0 3.37e-01 84.5% 41.4%
5000963 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.54 41.0 3.20e-01 81.4% 77.3%
4932238 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.54 41.0 3.26e-01 81.4% 83.9%
5057877 7504.1.1.3 a/b three-layered sandwiches › ITPase-like › ITPase-like › ITPase-like › Maf 0.54 40.0 3.27e-01 79.4% 78.9%
4941441 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.54 42.0 3.99e-01 85.6% 74.2%
4514345 274.1.1.50 a+b two layers › Pili subunits › Pili subunits › Pili subunits › Spore_YunB 0.54 42.0 3.65e-01 82.5% 83.4%
5043104 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.54 42.0 3.78e-01 84.5% 67.4%
5010249 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.53 42.0 3.92e-01 84.5% 72.5%
3399719 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 41.0 4.01e-01 82.5% 88.6%
4946617 512.1.1.5 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_3rd 0.53 41.0 3.95e-01 84.5% 74.8%
5054514 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 38.0 3.47e-01 75.3% 72.3%
5071837 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.53 42.0 3.76e-01 86.6% 63.6%
4941718 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 41.0 3.91e-01 84.5% 88.7%
3896411 11.1.1.414 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TMEM106 0.53 44.0 3.96e-01 90.7% 88.1%
5075688 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.53 41.0 3.63e-01 84.5% 60.7%
5068126 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.92e-01 82.5% 87.3%
3325426 2007.2.3.3 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Syja_N 0.52 42.0 3.50e-01 90.7% 87.4%
3238728 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 4.04e-01 81.4% 87.0%
3994571 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 40.0 3.43e-01 82.5% 70.0%
4101635 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.52 40.0 3.75e-01 84.5% 69.6%
3285689 512.1.1.0 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) 0.52 39.0 3.91e-01 83.5% 78.0%
4994610 512.1.1.2 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.52 41.0 3.95e-01 86.6% 76.5%
4975538 512.1.1.1 a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.52 40.0 3.16e-01 83.5% 39.1%
4225360 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 39.0 3.63e-01 81.4% 73.6%
4335827 11.1.1.612 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF5443 0.51 39.0 3.50e-01 83.5% 75.9%
4987319 1036.1.1.2 a+b two layers › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › 60S ribosomal export protein NMD3 a+b domain › PF29994 0.51 43.0 4.13e-01 90.7% 85.5%
3621653 6165.1.1.1 beta sandwiches › Piezo CTL2 domain › Piezo CTL2 domain › Piezo CTL2 domain › Piezo_RRas_bdg 0.51 39.0 3.10e-01 84.5% 95.8%
3923859 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 3.97e-01 83.5% 88.0%
3969662 5085.1.1.1 a+b duplicates or obligate multimers › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) › OEP 0.50 41.0 2.75e-01 88.7% 60.5%
3628355 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.50 36.0 2.54e-01 75.3% 32.4%