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LSDeep1_scaffold_41_prodigal-single.1__X__X__00501
Bact-VirLSDeep1_scaffold_41_prodigal-single.1__X__X__00501
Identity
- Kingdom:
- phage
Quality
81.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 191-278
Domain cluster:
rep: Salt_Pond_R2_restored_H2O_MG_scaffold_1_prodigal-single.1__X__X__00091__D2-104
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00639.28 best | Rotamase | 24.0 | 8.50e-05 | 89.8% | 72.9% |
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5ez1A01 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.90 | 85.0 | 8.05e-01 | 98.9% | 98.0% |
| 1yw5A02 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.90 | 85.0 | 7.68e-01 | 100.0% | 98.2% |
| 3gpkA00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.89 | 84.0 | 7.76e-01 | 100.0% | 89.8% |
| 5tvlA01 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.88 | 83.0 | 7.87e-01 | 100.0% | 93.1% |
| 6gmpA00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.87 | 81.0 | 7.22e-01 | 98.9% | 100.0% |
| 2jzvA00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.87 | 81.0 | 7.45e-01 | 100.0% | 95.5% |
| 1m5yC02 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.87 | 81.0 | 7.03e-01 | 100.0% | 78.9% |
| 2kgjA00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.86 | 80.0 | 7.55e-01 | 100.0% | 87.3% |
| 1m5yA03 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.86 | 79.0 | 7.39e-01 | 100.0% | 93.5% |
| 3nrkA02 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.85 | 78.0 | 7.21e-01 | 100.0% | 97.2% |
| 1jnsA00 | 3.10.50.40 | Alpha Beta › Roll › Chitinase A; domain 3 › | 0.82 | 75.0 | 7.46e-01 | 100.0% | 96.7% |
| 1crnA00 | 3.30.1350.10 | Alpha Beta › 2-Layer Sandwich › Crambin › Thionin-like | 0.67 | 36.0 | 4.73e-01 | 85.2% | 100.0% |
| 5ixuA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.64 | 40.0 | 3.79e-01 | 100.0% | 53.9% |
| 5k9fA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 39.0 | 3.73e-01 | 100.0% | 54.4% |
| 1a7gE00 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.61 | 39.0 | 4.01e-01 | 100.0% | 68.3% |
| 2lvsA02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.61 | 33.0 | 4.17e-01 | 87.5% | 93.9% |
| 3rrkA03 | 3.30.70.2750 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.61 | 38.0 | 4.14e-01 | 100.0% | 75.7% |
| 2hfvA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.60 | 37.0 | 4.00e-01 | 98.9% | 71.4% |
| 4bbyB04 | 3.30.70.3450 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 40.0 | 3.78e-01 | 97.7% | 60.6% |
| 2kcuA00 | 3.20.80.10 | Alpha Beta › Alpha-Beta Barrel › Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A › Regulatory factor, effector binding domain | 0.57 | 40.0 | 3.24e-01 | 100.0% | 38.6% |
| 1earA02 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.56 | 41.0 | 4.55e-01 | 81.8% | 98.6% |
| 1gmuA01 | 3.30.70.790 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › UreE, C-terminal domain | 0.56 | 39.0 | 4.40e-01 | 79.5% | 95.5% |
| 2pgcC01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 36.0 | 3.58e-01 | 100.0% | 60.8% |
| 2od4B01 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 35.0 | 3.54e-01 | 100.0% | 64.0% |
| 1ucnA00 | 3.30.70.141 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleoside diphosphate kinase-like domain | 0.54 | 39.0 | 3.34e-01 | 77.3% | 92.7% |
| 2g9oA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.54 | 32.0 | 3.34e-01 | 98.9% | 63.6% |
| 1f0xA01 | 3.30.70.610 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › D-lactate dehydrogenase, cap domain, subdomain 1 | 0.53 | 41.0 | 3.96e-01 | 83.0% | 93.0% |
| 2j4jF00 | 3.40.1160.10 | Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like | 0.53 | 40.0 | 2.97e-01 | 80.7% | 72.6% |
| 2uuvB01 | 3.40.462.40 | Alpha Beta › 3-Layer(aba) Sandwich › Vanillyl-alcohol Oxidase; Chain A, domain 3 › FAD-linked oxidase, cap domain/gating helix | 0.52 | 41.0 | 2.90e-01 | 83.0% | 64.4% |
| 1y10B02 | 3.30.70.1230 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain | 0.51 | 35.0 | 2.86e-01 | 72.7% | 55.2% |
| 5gt8D02 | 3.30.2130.10 | Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like | 0.50 | 35.0 | 3.25e-01 | 73.9% | 88.5% |
| 3qwuA03 | 3.30.70.2160 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 33.0 | 2.92e-01 | 100.0% | 43.2% |
| 6k2eA01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.50 | 36.0 | 4.03e-01 | 100.0% | 98.5% |
ECOD (71)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4946902 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.93 | 89.0 | 8.93e-01 | 100.0% | 100.0% |
| 4367583 | 284.1.1.8 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_3 | 0.93 | 89.0 | 8.45e-01 | 100.0% | 93.0% |
| 4460780 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.93 | 89.0 | 8.43e-01 | 100.0% | 93.0% |
| 3164735 | 284.1.1.7 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_2 | 0.93 | 88.0 | 6.15e-01 | 100.0% | 36.7% |
| 3973525 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.92 | 88.0 | 8.60e-01 | 100.0% | 95.7% |
| 4339408 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.92 | 87.0 | 8.45e-01 | 98.9% | 96.8% |
| 3445372 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.92 | 88.0 | 8.06e-01 | 100.0% | 91.7% |
| 3972913 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.92 | 87.0 | 6.05e-01 | 100.0% | 39.6% |
| 4678847 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.92 | 87.0 | 8.12e-01 | 100.0% | 96.2% |
| 4625535 | 284.1.1.8 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_3 | 0.92 | 87.0 | 8.11e-01 | 100.0% | 96.2% |
| 4680681 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.92 | 87.0 | 7.96e-01 | 100.0% | 90.0% |
| 3407466 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.91 | 87.0 | 7.34e-01 | 100.0% | 82.2% |
| 4011826 | 284.1.1.8 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_3 | 0.91 | 87.0 | 8.20e-01 | 100.0% | 89.3% |
| 3801691 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.91 | 87.0 | 8.46e-01 | 100.0% | 98.9% |
| 3311079 | 284.1.1.8 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_3 | 0.91 | 87.0 | 7.92e-01 | 100.0% | 81.8% |
| None | — | 0.91 | 86.0 | 5.38e-01 | 100.0% | 25.4% | |
| 3964988 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.91 | 86.0 | 7.89e-01 | 100.0% | 89.1% |
| 3593209 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.91 | 84.0 | 7.72e-01 | 97.7% | 100.0% |
| 4130746 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.91 | 86.0 | 8.03e-01 | 100.0% | 97.1% |
| 4092171 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.91 | 86.0 | 8.21e-01 | 100.0% | 96.0% |
| 1495280 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.91 | 86.0 | 7.52e-01 | 100.0% | 90.2% |
| 4168698 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.90 | 85.0 | 7.96e-01 | 100.0% | 96.2% |
| 4481593 | 589.1.1.10 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › Rotamase_3 | 0.90 | 85.0 | 5.84e-01 | 100.0% | 34.0% |
| 3590821 | 284.1.1.7 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_2 | 0.90 | 86.0 | 8.14e-01 | 100.0% | 97.0% |
| 3969314 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.90 | 85.0 | 8.28e-01 | 100.0% | 96.8% |
| 4659175 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.90 | 85.0 | 7.94e-01 | 100.0% | 97.1% |
| 4153633 | 589.1.1.0 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain | 0.90 | 83.0 | 5.20e-01 | 97.7% | 24.9% |
| 4269423 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.90 | 85.0 | 7.76e-01 | 100.0% | 92.7% |
| 4119493 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.90 | 85.0 | 7.77e-01 | 100.0% | 88.2% |
| 4065681 | 284.1.1.8 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_3 | 0.90 | 83.0 | 7.22e-01 | 97.7% | 90.4% |
| 4048238 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.89 | 83.0 | 7.28e-01 | 100.0% | 81.6% |
| 3972356 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.89 | 82.0 | 7.80e-01 | 97.7% | 99.0% |
| 4208583 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.89 | 83.0 | 7.79e-01 | 100.0% | 97.1% |
| 4335352 | 589.1.1.0 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain | 0.89 | 83.0 | 5.25e-01 | 100.0% | 26.4% |
| 4109346 | 284.1.1.8 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_3 | 0.89 | 83.0 | 7.63e-01 | 100.0% | 90.0% |
| 3972339 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.88 | 84.0 | 7.80e-01 | 100.0% | 94.3% |
| 4350483 | 284.1.1.8 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_3 | 0.88 | 83.0 | 7.75e-01 | 100.0% | 87.6% |
| 360216 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.88 | 83.0 | 7.87e-01 | 100.0% | 96.0% |
| 3972336 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.88 | 83.0 | 7.60e-01 | 100.0% | 90.0% |
| 4421334 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.88 | 81.0 | 7.25e-01 | 96.6% | 75.7% |
| 4608145 | 284.1.1.8 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_3 | 0.88 | 83.0 | 7.58e-01 | 100.0% | 94.5% |
| 3944314 | 284.1.1.8 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_3 | 0.88 | 83.0 | 8.09e-01 | 100.0% | 93.7% |
| 3980862 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.88 | 83.0 | 8.11e-01 | 100.0% | 93.7% |
| 4010521 | 284.1.1.7 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_2 | 0.88 | 83.0 | 5.34e-01 | 100.0% | 25.4% |
| 4433298 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.88 | 83.0 | 7.58e-01 | 100.0% | 91.8% |
| 4536937 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.88 | 82.0 | 7.79e-01 | 98.9% | 96.0% |
| 4337921 | 284.1.1.7 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_2 | 0.87 | 82.0 | 7.67e-01 | 100.0% | 90.5% |
| 3963298 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.87 | 81.0 | 7.72e-01 | 100.0% | 94.0% |
| 4338787 | 284.1.1.8 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_3 | 0.87 | 81.0 | 7.44e-01 | 100.0% | 90.9% |
| 4074427 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.86 | 81.0 | 7.54e-01 | 100.0% | 95.2% |
| 4208481 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.86 | 80.0 | 7.50e-01 | 100.0% | 97.1% |
| 4127449 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.86 | 80.0 | 7.35e-01 | 100.0% | 90.9% |
| 3579317 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.86 | 66.0 | 6.26e-01 | 79.5% | 96.0% |
| 3599269 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.85 | 79.0 | 6.86e-01 | 100.0% | 97.7% |
| 4276484 | 284.1.1.8 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_3 | 0.85 | 79.0 | 7.28e-01 | 100.0% | 91.8% |
| 4266766 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.84 | 78.0 | 5.52e-01 | 100.0% | 38.4% |
| 3964206 | 284.1.1.7 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_2 | 0.83 | 76.0 | 7.60e-01 | 100.0% | 95.6% |
| 3969880 | 589.1.1.23 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain › Rotamase | 0.83 | 77.0 | 5.41e-01 | 100.0% | 39.6% |
| 3620234 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.83 | 77.0 | 6.18e-01 | 100.0% | 72.5% |
| 4308230 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.79 | 73.0 | 6.86e-01 | 100.0% | 89.5% |
| 4274514 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.78 | 70.0 | 6.68e-01 | 97.7% | 99.0% |
| 4186987 | 284.1.1.0 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like | 0.75 | 68.0 | 6.79e-01 | 100.0% | 97.8% |
| 4550560 | 284.1.1.3 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase | 0.72 | 65.0 | 5.97e-01 | 100.0% | 89.6% |
| 4358681 | 589.1.1.0 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain | 0.72 | 65.0 | 4.52e-01 | 100.0% | 34.4% |
| 3387970 | 284.1.1.7 ↗ | a+b two layers › FKBP-like › FKBP-like › FKBP-like › Rotamase_2 | 0.69 | 63.0 | 6.13e-01 | 98.9% | 95.8% |
| 3887625 | 382.1.1.4 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › ecTbetaR2 | 0.68 | 45.0 | 4.23e-01 | 100.0% | 56.2% |
| 4970338 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.61 | 36.0 | 3.30e-01 | 97.7% | 43.5% |
| 4945381 | 304.3.1.0 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain | 0.56 | 35.0 | 3.63e-01 | 97.7% | 65.9% |
| 4954226 | 304.122.1.1 ↗ | a+b two layers › Alpha-beta plaits › Nitrogen repressor-like proteins › Nitrogen repressor-like proteins › NRD1_2 | 0.55 | 42.0 | 4.05e-01 | 81.8% | 80.0% |
| 3211853 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.54 | 36.0 | 3.25e-01 | 98.9% | 47.2% |
| 3497119 | 868.1.1.0 ↗ | a+b complex topology › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related › mRNA triphosphatase CET1-related | 0.50 | 44.0 | 3.27e-01 | 100.0% | 84.8% |
D2
medium
residues 81-123_292-335
Domain cluster:
representative
CATH (6)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6fakA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.70 | 41.0 | 4.23e-01 | 93.1% | 61.7% |
| 1n5uA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.66 | 39.0 | 3.94e-01 | 95.4% | 56.7% |
| 1kxpD02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.66 | 40.0 | 3.99e-01 | 94.3% | 59.1% |
| 1yt3A02 | 1.10.150.80 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › HRDC domain | 0.52 | 38.0 | 3.67e-01 | 75.9% | 81.8% |
| 1zxjA01 | 1.10.3120.10 | Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain | 0.51 | 38.0 | 2.98e-01 | 78.2% | 50.8% |
| 3ctwB00 | 1.10.8.930 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Protein of unknown function DUF1465 | 0.51 | 35.0 | 3.08e-01 | 70.1% | 57.5% |
ECOD (5)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5081529 | 3931.1.1.0 ↗ | alpha bundles › MtlR-like › MtlR-like › MtlR-like | 0.59 | 48.0 | 4.19e-01 | 89.7% | 82.2% |
| 3263307 | 524.1.1.1 ↗ | alpha arrays › Ypt/Rab-GAP domain of gyp1p-like › Ypt/Rab-GAP domain of gyp1p › Ypt/Rab-GAP domain of gyp1p › RabGAP-TBC | 0.53 | 40.0 | 3.41e-01 | 78.2% | 100.0% |
| 5040955 | 5058.1.1.2 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › MS_channel_1st | 0.52 | 37.0 | 3.52e-01 | 89.7% | 61.9% |
| 3255910 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.52 | 44.0 | 2.93e-01 | 97.7% | 44.9% |
| 4971428 | 2498.1.1.10 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M48 | 0.51 | 43.0 | 3.14e-01 | 89.7% | 51.6% |
D3
medium
residues 124-190
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3l8kA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.76 | 58.0 | 4.07e-01 | 100.0% | 25.8% |
| 2hszA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.71 | 44.0 | 4.31e-01 | 98.5% | 56.0% |
| 8e9gK01 | 1.10.287.3510 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.66 | 50.0 | 4.52e-01 | 97.0% | 59.3% |
| 2ke4A00 | 6.10.140.470 | Special › Helix non-globular › Helix Hairpins › | 0.64 | 49.0 | 4.30e-01 | 89.6% | 56.1% |
| 4u7bA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 29.0 | 3.51e-01 | 86.6% | 69.2% |
| 4ri6A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.61 | 39.0 | 3.26e-01 | 85.1% | 36.1% |
| 1fc3B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.60 | 44.0 | 3.87e-01 | 79.1% | 100.0% |
| 4dciA00 | 6.10.140.1110 | Special › Helix non-globular › Helix Hairpins › | 0.58 | 44.0 | 3.41e-01 | 95.5% | 36.7% |
| 3ckyA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.55 | 41.0 | 3.28e-01 | 79.1% | 56.7% |
| 3bg2A03 | 1.10.3410.10 | Mainly Alpha › Orthogonal Bundle › putative deoxyguanosinetriphosphate triphosphohydrolase fold › putative deoxyguanosinetriphosphate triphosphohydrolase like domain | 0.55 | 47.0 | 4.20e-01 | 97.0% | 68.8% |
| 1axdA02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.54 | 38.0 | 3.22e-01 | 79.1% | 40.7% |
| 1rv2D04 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.52 | 40.0 | 3.98e-01 | 95.5% | 78.6% |
| 3icxA01 | 1.10.287.660 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin | 0.52 | 42.0 | 4.05e-01 | 89.6% | 78.7% |
| 3r0qA02 | 2.70.160.11 | Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 | 0.50 | 43.0 | 3.13e-01 | 100.0% | 64.9% |
ECOD (12)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4484832 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.87 | 80.0 | 5.88e-01 | 100.0% | 41.9% |
| 4945888 | 5041.1.1.0 ↗ | extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C | 0.70 | 54.0 | 5.12e-01 | 89.6% | 70.0% |
| 4305146 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.67 | 52.0 | 3.76e-01 | 91.0% | 29.7% |
| 5055460 | 7516.1.1.2 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 | 0.66 | 43.0 | 2.79e-01 | 89.6% | 16.3% |
| 3590415 | 3646.1.1.1 ↗ | alpha complex topology › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › T-component of energy-coupling factor (ECF) transporters › CbiQ | 0.65 | 54.0 | 3.81e-01 | 94.0% | 29.1% |
| 4177674 | 4992.1.1.23 ↗ | extended segments › RelB-like › RelB-like › RelB-like › Seryl_tRNA_N | 0.65 | 48.0 | 4.02e-01 | 82.1% | 47.3% |
| 4269802 | 589.1.2.1 ↗ | alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › TF C-terminus (Pfam 05698) › Trigger_C | 0.64 | 55.0 | 4.06e-01 | 97.0% | 35.1% |
| 4289129 | 109.1.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C | 0.63 | 43.0 | 3.46e-01 | 85.1% | 36.2% |
| 4540106 | 3396.1.1.3 ↗ | extended segments › HIG1 domain family member 1A › HIG1 domain family member 1A › HIG1 domain family member 1A › DUF4481 | 0.62 | 55.0 | 5.19e-01 | 100.0% | 82.5% |
| 3900975 | 604.1.1.92 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3 | 0.61 | 49.0 | 3.88e-01 | 89.6% | 43.8% |
| 3855782 | 604.1.1.92 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › SR_desmoplakin_3 | 0.60 | 48.0 | 3.92e-01 | 89.6% | 47.5% |
| 3429415 | 109.1.1.1 ↗ | alpha superhelices › Repetitive alpha hairpins › Glutathione S-transferase (GST)-C › Glutathione S-transferase (GST)-C › GST_C | 0.57 | 45.0 | 3.24e-01 | 89.6% | 42.8% |