←Back to structures

LSDeep1_scaffold_41_prodigal-single.1XX__00507

Bact-Vir

LSDeep1_scaffold_41_prodigal-single.1__X__X__00507

Identity

Kingdom:: phage

Quality

82.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 44-104

PDB

Domain cluster: representative

CATH (12)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3ecsC01	1.20.120.1070	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain	0.66	52.0	4.50e-01	88.5%	75.0%
4ragA02	1.10.10.430	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Phosphatase 2C, C-terminal domain suprefamily	0.63	44.0	4.27e-01	78.7%	66.2%
1kl9A02	1.10.150.190	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Translation initiation factor 2; subunit 1; domain 2	0.61	41.0	3.69e-01	70.5%	48.9%
3ajfA00	1.20.1440.190	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tenuivirus movement protein	0.59	48.0	4.35e-01	98.4%	81.5%
4nqwA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.58	39.0	3.88e-01	70.5%	79.7%
7r97A01	1.10.1520.10	Mainly Alpha › Orthogonal Bundle › Ribonuclease iii, N-terminal Endonuclease Domain; Chain A › Ribonuclease III domain	0.57	42.0	3.28e-01	80.3%	55.4%
2zxqA06	1.20.1270.70	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Designed single chain three-helix bundle	0.55	36.0	3.60e-01	70.5%	63.6%
2f33A01	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.55	45.0	4.35e-01	98.4%	88.7%
2lrdA00	1.10.10.1840	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A ›	0.54	41.0	4.11e-01	90.2%	83.6%
2zttA00	6.10.140.720	Special › Helix non-globular › Helix Hairpins ›	0.52	39.0	3.81e-01	88.5%	82.2%
2go7A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.52	35.0	3.44e-01	80.3%	64.2%
1j5wA02	1.20.58.180	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2	0.50	41.0	3.94e-01	100.0%	94.8%

ECOD (2)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3168021	604.12.1.2 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Vta1	0.54	44.0	4.18e-01	100.0%	80.0%
3359095	604.12.1.0 ↗	alpha bundles › Spectrin repeat-like › MIT domain › MIT domain	0.52	42.0	4.04e-01	98.4%	100.0%

D2 medium residues 113-194

PDB

Domain cluster: representative

Pfam (1)

Accession	Name	Score	E-value	Q cov	HMM cov
PF13817.12 best	DDE_Tnp_IS66_C	31.4	2.50e-07	46.3%	100.0%

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1w33A00	1.10.3160.10	Mainly Alpha › Orthogonal Bundle › Bbcrasp-1 › Bbcrasp-1	0.57	49.0	3.83e-01	97.6%	80.1%
3c24A02	1.10.3640.10	Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal	0.55	34.0	3.26e-01	95.1%	51.0%
1zxjA01	1.10.3120.10	Mainly Alpha › Orthogonal Bundle › Trigger factor, domain 2 › Trigger factor, C-terminal domain	0.51	40.0	3.16e-01	87.8%	82.2%

ECOD (6)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3505269	103.1.1.118 ↗	alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain › DDE_Tnp_IS66, DDE_Tnp_IS66_C	0.84	73.0	7.39e-01	97.6%	95.0%
3589160	2484.1.1.231 ↗	mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_IS66, DDE_Tnp_IS66_C	0.84	77.0	5.57e-01	97.6%	39.0%
3179413	4121.1.1.1 ↗	a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA	0.63	43.0	2.86e-01	70.7%	38.5%
4672000	589.1.1.0 ↗	alpha arrays › Triger factor/SurA peptide-binding domain-like › Triger factor/SurA peptide-binding domain-like › Porin chaperone SurA, peptide-binding domain	0.62	49.0	3.86e-01	86.6%	88.0%
1868087	622.1.1.2 ↗	alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HsbA	0.61	33.0	3.30e-01	89.0%	50.0%
4017717	5001.1.1.85 ↗	alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Fung_rhodopsin	0.53	42.0	3.02e-01	91.5%	56.1%