←Back to structures
LSDeep1_scaffold_41_prodigal-single.1__X__X__00524
Bact-VirLSDeep1_scaffold_41_prodigal-single.1__X__X__00524
Identity
- Kingdom:
- phage
Quality
93.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 99-155
Domain cluster:
representative
CATH (5)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2pjqA01 | 1.10.472.50 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like | 0.60 | 44.0 | 3.79e-01 | 77.2% | 64.0% |
| 1o57A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 41.0 | 3.79e-01 | 73.7% | 62.5% |
| 3a52A02 | 1.10.60.40 | Mainly Alpha › Orthogonal Bundle › Diphtheria Toxin Repressor; domain 2 › | 0.53 | 44.0 | 3.99e-01 | 100.0% | 70.6% |
| 7x4oB01 | 3.30.1520.10 | Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain | 0.52 | 42.0 | 3.33e-01 | 86.0% | 73.9% |
| 1reqA02 | 3.40.50.280 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain | 0.50 | 38.0 | 2.90e-01 | 89.5% | 40.9% |
ECOD (4)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| None | — | 0.80 | 54.0 | 3.75e-01 | 80.7% | 23.1% | |
| 4033774 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.64 | 42.0 | 4.19e-01 | 73.7% | 65.0% |
| 3744555 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.54 | 47.0 | 2.81e-01 | 100.0% | 30.6% |
| 138879 | 7515.1.1.1 ↗ | a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like › Alk_phosphatase | 0.51 | 44.0 | 2.69e-01 | 98.2% | 14.0% |
D2
medium
residues 1-92
Domain cluster:
representative
CATH (9)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1sezA02 | 3.90.660.20 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › Protoporphyrinogen oxidase, mitochondrial; domain 2 | 0.83 | 77.0 | 6.00e-01 | 100.0% | 53.5% |
| 3nrnA02 | 3.90.660.50 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.82 | 65.0 | 5.14e-01 | 96.7% | 43.8% |
| 2ivdA02 | 3.90.660.20 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › Protoporphyrinogen oxidase, mitochondrial; domain 2 | 0.81 | 76.0 | 5.91e-01 | 100.0% | 51.6% |
| 3ukhA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.81 | 75.0 | 4.61e-01 | 100.0% | 23.7% |
| 3i6dA02 | 3.90.660.20 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › Protoporphyrinogen oxidase, mitochondrial; domain 2 | 0.81 | 75.0 | 5.79e-01 | 100.0% | 50.5% |
| 3lovA02 | 3.90.660.20 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › Protoporphyrinogen oxidase, mitochondrial; domain 2 | 0.80 | 74.0 | 5.64e-01 | 100.0% | 47.0% |
| 3ka7A02 | 3.90.660.50 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.73 | 65.0 | 5.00e-01 | 100.0% | 44.2% |
| 3qj4A02 | 3.90.660.10 | Alpha Beta › Alpha-Beta Complex › Polyamine Oxidase; Chain A, domain 2 › | 0.73 | 65.0 | 5.24e-01 | 100.0% | 51.7% |
| 2il5A00 | 3.30.530.20 | Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain | 0.56 | 45.0 | 3.77e-01 | 87.0% | 88.3% |
ECOD (46)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5055685 | 2003.1.3.27 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Amino_oxidase | 0.97 | 94.0 | 5.74e-01 | 100.0% | 20.2% |
| 4988239 | 2003.1.3.27 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Amino_oxidase | 0.94 | 90.0 | 5.51e-01 | 100.0% | 20.0% |
| 4974787 | 2003.1.2.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase | 0.93 | 89.0 | 5.50e-01 | 100.0% | 21.1% |
| 4940843 | 2003.1.2.29 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › NAD_binding_8 | 0.93 | 89.0 | 5.50e-01 | 100.0% | 21.9% |
| 5016542 | 2003.1.2.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase | 0.92 | 87.0 | 5.35e-01 | 100.0% | 20.2% |
| 5075112 | 2003.1.3.27 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Amino_oxidase | 0.92 | 87.0 | 5.36e-01 | 100.0% | 20.9% |
| 5029346 | 2003.1.2.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase | 0.91 | 85.0 | 5.22e-01 | 100.0% | 19.8% |
| 5056036 | 2003.1.2.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase | 0.91 | 86.0 | 5.26e-01 | 100.0% | 19.8% |
| 5069128 | 2003.1.2.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase | 0.89 | 82.0 | 5.11e-01 | 100.0% | 20.5% |
| 3618062 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.86 | 81.0 | 4.96e-01 | 100.0% | 20.2% |
| 5058037 | 2003.1.2.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase | 0.85 | 79.0 | 4.94e-01 | 100.0% | 21.2% |
| 3994592 | 2003.1.3.27 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Amino_oxidase | 0.85 | 80.0 | 4.90e-01 | 100.0% | 20.2% |
| 5006154 | 2003.1.3.27 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Amino_oxidase | 0.84 | 78.0 | 4.95e-01 | 100.0% | 22.8% |
| 5028419 | 2003.1.2.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase | 0.83 | 77.0 | 4.89e-01 | 100.0% | 22.1% |
| 3592827 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.83 | 78.0 | 4.79e-01 | 100.0% | 19.8% |
| 3988286 | 2003.1.3.36 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › GLF | 0.83 | 50.0 | 3.79e-01 | 100.0% | 28.7% |
| 5021080 | 2003.1.2.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase | 0.83 | 78.0 | 4.85e-01 | 100.0% | 21.2% |
| 3802288 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.83 | 77.0 | 7.12e-01 | 100.0% | 90.4% |
| 1381139 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.83 | 78.0 | 7.19e-01 | 100.0% | 82.3% |
| 3648067 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.83 | 77.0 | 4.74e-01 | 100.0% | 21.2% |
| 6708 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.83 | 77.0 | 7.18e-01 | 100.0% | 88.4% |
| 3574512 | 2003.1.3.27 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Amino_oxidase | 0.83 | 77.0 | 4.79e-01 | 100.0% | 20.7% |
| 4886506 | 2003.1.2.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase | 0.83 | 73.0 | 7.00e-01 | 94.6% | 93.3% |
| 1138951 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.82 | 76.0 | 6.68e-01 | 100.0% | 89.3% |
| 4987729 | 2003.1.2.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase | 0.82 | 76.0 | 4.70e-01 | 100.0% | 20.2% |
| 6709 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.82 | 76.0 | 7.16e-01 | 100.0% | 88.0% |
| 3290716 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.81 | 75.0 | 4.72e-01 | 100.0% | 21.0% |
| 3836792 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.81 | 75.0 | 4.71e-01 | 100.0% | 20.7% |
| None | — | 0.81 | 51.0 | 3.25e-01 | 100.0% | 14.9% | |
| 137365 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.81 | 75.0 | 6.86e-01 | 100.0% | 82.2% |
| 4033363 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.81 | 75.0 | 4.65e-01 | 100.0% | 20.9% |
| 4988481 | 2003.1.2.17 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Amino_oxidase | 0.81 | 74.0 | 4.71e-01 | 100.0% | 21.9% |
| 3287364 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.81 | 51.0 | 3.22e-01 | 100.0% | 14.9% |
| 1765428 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.81 | 74.0 | 7.06e-01 | 100.0% | 87.9% |
| 3659880 | 244.1.1.6 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › Amino_oxidase | 0.80 | 73.0 | 6.57e-01 | 100.0% | 93.6% |
| 3958738 | 244.1.1.7 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GLF | 0.79 | 47.0 | 4.32e-01 | 95.7% | 47.8% |
| 1678273 | 244.1.1.7 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C › GLF | 0.79 | 51.0 | 5.73e-01 | 100.0% | 82.4% |
| 4419526 | 2003.1.2.18 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain | 0.79 | 72.0 | 4.47e-01 | 100.0% | 19.2% |
| 4338529 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.76 | 69.0 | 6.43e-01 | 100.0% | 92.2% |
| 4328790 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.76 | 47.0 | 3.06e-01 | 100.0% | 15.7% |
| 3960066 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.75 | 58.0 | 5.88e-01 | 82.6% | 100.0% |
| 3760822 | 244.1.1.0 ↗ | a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C | 0.73 | 65.0 | 6.18e-01 | 100.0% | 84.5% |
| 5019384 | 304.39.1.0 ↗ | a+b two layers › Alpha-beta plaits › Mechanosensitive channel protein MscS (YggB), C-terminal domain › Mechanosensitive channel protein MscS (YggB), C-terminal domain | 0.58 | 44.0 | 4.44e-01 | 88.0% | 81.1% |
| 3192419 | 2484.1.1.114 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C | 0.53 | 38.0 | 2.87e-01 | 76.1% | 82.4% |
| 4989562 | 304.3.1.4 ↗ | a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain › MCR_D | 0.51 | 44.0 | 3.85e-01 | 100.0% | 77.2% |
| 3733008 | 2484.1.1.114 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Med13_C | 0.50 | 37.0 | 2.63e-01 | 79.3% | 79.4% |