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LSDeep1_scaffold_42_prodigal-single.1__X__X__00008

Bact-Vir

LSDeep1_scaffold_42_prodigal-single.1__X__X__00008

Identity

Kingdom:
phage

Quality

76.8 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-98
PDB
Domain cluster: rep: GWB1_scaffold_5_curated_closed_complete_prodigal-single.1__X__X__00553__D9-103
D2 high residues 163-313
PDB
Domain cluster: rep: LacPavin_0818_WC40_scaffold_575784_prodigal-single.1__X__X__00017__D71-177
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gnxA02 3.30.450.240 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.55 32.0 3.69e-01 78.8% 78.9%
3lifA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 30.0 3.73e-01 72.2% 94.4%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3743593 59.1.1.0 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like 0.63 35.0 4.54e-01 76.2% 100.0%
5044629 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.62 30.0 3.45e-01 71.5% 60.0%
5065450 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 35.0 3.49e-01 74.2% 53.5%
4025792 223.2.1.3 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › Clat_adaptor_s 0.59 35.0 3.47e-01 83.4% 53.7%
4928046 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.58 35.0 3.81e-01 79.5% 72.5%
3390111 223.2.1.16 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like › LAMTOR5 0.56 31.0 3.79e-01 81.5% 87.8%
3692189 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.53 30.0 3.17e-01 81.5% 60.0%
5052185 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 27.0 2.95e-01 78.8% 56.9%
5016233 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 30.0 3.44e-01 94.7% 78.7%
5017794 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.51 30.0 3.72e-01 73.5% 97.8%