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LSDeep1_scaffold_42_prodigal-single.1__X__X__00017

Bact-Vir

LSDeep1_scaffold_42_prodigal-single.1__X__X__00017

Identity

Kingdom:
phage

Quality

65.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-74
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2q5zB00 1.10.287.1080 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › MazG-like 0.65 37.0 3.35e-01 85.9% 42.6%
3hpcX00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.63 52.0 4.02e-01 90.1% 72.9%
4m52A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.62 47.0 3.25e-01 80.3% 42.8%
3cqyA02 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 47.0 3.52e-01 85.9% 66.3%
2rcnA03 1.10.40.50 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Probable gtpase engc; domain 3 0.60 29.0 3.17e-01 77.5% 54.8%
1gg1A00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.58 50.0 3.28e-01 100.0% 82.6%
1avoB00 1.20.120.180 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Proteasome activator pa28, C-terminal domain 0.58 50.0 4.09e-01 100.0% 89.3%
1xwrC00 1.10.260.40 Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains 0.56 38.0 3.77e-01 70.4% 72.4%
4heoA00 1.10.8.10 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain 0.56 40.0 4.50e-01 93.0% 98.2%
2fztA00 6.10.250.50 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.54 46.0 4.51e-01 100.0% 84.4%
1a8rA01 1.10.286.10 Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain 0.54 37.0 3.58e-01 73.2% 67.1%
3r2cA00 1.10.940.10 Mainly Alpha › Orthogonal Bundle › N-utilizing Substance Protein B Homolog; Chain A › NusB-like 0.51 42.0 3.33e-01 93.0% 44.9%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3705890 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.63 45.0 4.04e-01 74.6% 85.3%
3309133 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.63 39.0 3.73e-01 80.3% 52.9%
3323413 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.59 40.0 3.82e-01 71.8% 83.5%
3593421 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.59 42.0 3.86e-01 74.6% 83.3%
3706037 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.58 49.0 3.11e-01 93.0% 67.0%
3573674 632.13.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like 0.57 44.0 4.27e-01 83.1% 81.2%
4177433 190.1.1.0 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box 0.57 39.0 3.94e-01 70.4% 97.1%
3789281 192.29.1.0 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) 0.56 48.0 3.44e-01 100.0% 54.3%
3781444 5076.1.1.1 ↗ alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr 0.55 48.0 3.18e-01 98.6% 83.7%
4655994 601.7.1.6 ↗ alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › GlnD_UR_UTase 0.53 41.0 3.41e-01 85.9% 76.2%
3399908 190.1.1.1 ↗ alpha arrays › HMG-box-like › HMG-box › HMG-box › HMG_box 0.52 32.0 3.24e-01 77.5% 58.7%
3290231 106.1.1.11 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › RsbRD_N 0.50 43.0 3.60e-01 100.0% 99.3%