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LSDeep1_scaffold_42_prodigal-single.1__X__X__00033

Bact-Vir

LSDeep1_scaffold_42_prodigal-single.1__X__X__00033

Identity

Kingdom:
phage

Quality

80.2 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 26-163
PDB
Domain cluster: representative
CATH (11)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d1jB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.63 37.0 3.79e-01 81.2% 58.8%
5bncA02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.55 36.0 4.20e-01 74.6% 96.8%
3k1lA01 3.30.457.40 Alpha Beta › 2-Layer Sandwich › Copper Amine Oxidase; Chain A, domain 1 › 0.55 36.0 4.19e-01 81.2% 100.0%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.55 39.0 4.34e-01 94.9% 96.3%
1h6lA00 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.53 43.0 3.19e-01 84.8% 93.8%
2gfgA00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.52 33.0 3.04e-01 89.9% 46.1%
1yrzA02 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 40.0 3.52e-01 81.9% 67.3%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 40.0 3.02e-01 81.9% 37.4%
6mzoA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 32.0 3.41e-01 84.1% 69.0%
5yjlC02 3.20.180.10 Alpha Beta › Alpha-Beta Barrel › Split barrel-like › PNP-oxidase-like 0.51 37.0 4.02e-01 76.8% 93.7%
1zc3B00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 30.0 3.36e-01 74.6% 73.4%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4007983 252.2.1.5 ↗ a+b two layers › DNA-binding domain › GCC-box binding domain-like › GCC-box binding domain-like › Arm-DNA-bind_3 0.65 37.0 4.40e-01 81.9% 81.1%
4935472 330.4.1.0 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain 0.61 32.0 4.29e-01 78.3% 100.0%
4262169 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.60 40.0 4.62e-01 84.8% 98.9%
3377087 5.1.4.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 42.0 3.05e-01 71.0% 54.6%
4042799 9.1.1.9 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeT 0.59 43.0 3.82e-01 76.8% 74.0%
4157358 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.58 34.0 4.22e-01 79.0% 100.0%
3968288 7520.1.1.1 ↗ a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like › CinA 0.58 42.0 3.93e-01 75.4% 84.1%
3820010 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.57 38.0 3.63e-01 71.7% 57.5%
4056787 9.1.1.9 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeT 0.57 42.0 3.89e-01 77.5% 76.7%
4941591 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.56 35.0 3.50e-01 71.0% 58.6%
3303563 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.56 37.0 3.53e-01 71.0% 57.5%
None — 0.55 40.0 2.59e-01 76.1% 63.8%
3194191 5.1.4.97 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rrn6_beta-prop 0.55 43.0 2.91e-01 81.9% 39.4%
4974235 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.55 37.0 3.48e-01 84.8% 55.8%
4980779 512.1.1.1 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_1st 0.55 36.0 4.20e-01 81.9% 95.8%
4927376 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 38.0 2.87e-01 71.0% 45.8%
3805100 881.1.1.1 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › PsbP 0.54 37.0 3.39e-01 71.7% 52.1%
4936151 881.1.1.0 ↗ a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.53 37.0 3.53e-01 70.3% 62.5%
3215406 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.53 46.0 3.24e-01 97.8% 57.5%
4077476 9.1.1.9 ↗ beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › CpeT 0.53 37.0 3.32e-01 71.0% 71.6%
3816749 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.51 39.0 3.02e-01 81.9% 46.6%
3436392 5.1.3.142 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Beta-prop_AT5G49610-like 0.50 37.0 2.74e-01 75.4% 81.2%
3257454 220.1.1.12 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Myosin_TH1 0.50 37.0 3.29e-01 76.8% 83.9%
3178078 220.1.1.70 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 0.50 35.0 3.30e-01 70.3% 70.3%
3739945 5.1.4.164 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.50 40.0 2.99e-01 86.2% 36.0%
3517402 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.50 34.0 3.77e-01 70.3% 99.1%