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LSDeep1_scaffold_42_prodigal-single.1__X__X__00051

Bact-Vir

LSDeep1_scaffold_42_prodigal-single.1__X__X__00051

Identity

Kingdom:
phage

Quality

75.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 47-81_171-285
PDB
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.62 37.0 4.31e-01 79.3% 83.7%
1khiA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 31.0 4.27e-01 76.7% 96.0%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.62 25.0 3.79e-01 77.3% 90.2%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 29.0 4.13e-01 82.0% 100.0%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.61 35.0 4.28e-01 77.3% 87.4%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.58 34.0 3.67e-01 70.0% 65.2%
4ft4B01 2.30.30.490 Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain 0.52 36.0 3.60e-01 70.0% 84.7%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4049824 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 37.0 4.13e-01 84.0% 65.2%
3629536 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 37.0 4.55e-01 82.0% 82.1%
3507146 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 35.0 4.53e-01 82.0% 87.1%
3500542 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 35.0 4.32e-01 84.0% 84.4%
3238955 4.1.1.377 beta barrels › SH3 › SH3 › SH3 › MSL3_chromo-like 0.65 34.0 4.44e-01 73.3% 93.8%
3281945 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.64 35.0 4.27e-01 70.7% 84.4%
5024617 4.15.1.2 beta barrels › SH3 › TrmB C-terminal domain-like › TrmB C-terminal domain-like › PF31112 0.64 38.0 4.68e-01 77.3% 92.6%
3684646 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 31.0 4.07e-01 76.7% 85.0%
4863266 4.1.1.139 beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.63 28.0 4.20e-01 80.7% 96.9%
3328647 4.1.1.219 beta barrels › SH3 › SH3 › SH3 › LSM12_LSM 0.62 32.0 4.05e-01 72.7% 84.7%
4547801 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 31.0 3.83e-01 70.7% 76.7%
3923766 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 38.0 4.35e-01 73.3% 88.7%
4932514 4.23.1.2 beta barrels › SH3 › Dom34/Pelota N-terminal domain-like › Dom34/Pelota N-terminal domain-like › PF26356 0.56 39.0 4.33e-01 80.0% 90.0%
3505947 4.25.1.2 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD 0.55 39.0 4.29e-01 71.3% 98.3%
3670468 4.1.1.332 beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.55 34.0 3.63e-01 73.3% 70.0%
3390463 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.55 23.0 3.30e-01 74.0% 86.2%
3471995 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.52 27.0 3.28e-01 81.3% 75.8%
3842363 1.1.5.76 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › CABIT 0.52 37.0 4.20e-01 82.7% 100.0%
3995290 4.1.1.332 beta barrels › SH3 › SH3 › SH3 › Peptidase_C1 0.52 36.0 4.12e-01 72.0% 95.5%
4949773 4.11.1.0 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.52 38.0 3.89e-01 100.0% 78.6%
3588655 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.51 36.0 3.42e-01 82.7% 60.0%
3285829 4.1.1.425 beta barrels › SH3 › SH3 › SH3 › RNHCP 0.50 30.0 3.44e-01 79.3% 81.0%
3277727 4.8.1.43 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › RNHCP 0.50 30.0 3.59e-01 79.3% 90.5%
D2 high residues 96-168
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2do3A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.84 53.0 6.21e-01 90.4% 92.2%
2e70A00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.83 53.0 5.42e-01 95.9% 67.6%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.80 53.0 4.79e-01 90.4% 51.0%
2mysA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.80 49.0 5.78e-01 89.0% 93.8%
2xk0A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.79 49.0 5.07e-01 90.4% 66.7%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.78 49.0 5.52e-01 89.0% 83.9%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.78 50.0 5.45e-01 89.0% 81.4%
5i4eA01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.74 43.0 5.18e-01 82.2% 91.3%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.74 53.0 5.56e-01 91.8% 83.6%
3h8zA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 42.0 5.01e-01 83.6% 89.6%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 53.0 5.78e-01 90.4% 96.7%
1lckA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 53.0 5.78e-01 91.8% 98.3%
1x6bA01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.70 52.0 5.50e-01 90.4% 89.1%
2vb6A01 2.30.30.360 Mainly Beta › Roll › SH3 type barrels. › Myosin S1 fragment, N-terminal 0.70 48.0 5.42e-01 98.6% 96.3%
2gfaB01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 50.0 5.38e-01 95.9% 88.7%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 52.0 5.00e-01 91.8% 70.2%
1ge8A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.67 46.0 3.26e-01 72.6% 46.6%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.65 48.0 4.71e-01 89.0% 73.1%
1f39A00 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.63 44.0 4.00e-01 100.0% 53.5%
2ew0A00 3.40.1740.10 Alpha Beta › 3-Layer(aba) Sandwich › VC0467-like › VC0467-like 0.63 55.0 4.19e-01 98.6% 90.3%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.62 50.0 4.80e-01 93.2% 75.9%
3u97A00 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.61 43.0 4.32e-01 75.3% 89.6%
4n4iA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.60 54.0 5.05e-01 100.0% 82.2%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.57 42.0 3.03e-01 78.1% 81.1%
1ud9A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 46.0 3.25e-01 90.4% 93.8%
1gutA00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.57 39.0 4.03e-01 84.9% 77.6%
1b9mA03 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.56 41.0 4.23e-01 89.0% 81.7%
6zxfz01 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.56 38.0 3.24e-01 71.2% 90.2%
2grgA01 3.40.1840.10 Alpha Beta › 3-Layer(aba) Sandwich › Profilin-like › YNR034W-A-like 0.56 39.0 3.75e-01 72.6% 97.6%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.57e-01 82.2% 80.7%
4gs5A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.54 38.0 2.70e-01 75.3% 38.5%
4l68A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.53 41.0 3.59e-01 82.2% 94.5%
2rprA00 2.20.25.240 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.53 43.0 4.09e-01 100.0% 73.6%
4r7rA00 3.30.1490.410 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Uncharacterised protein PF16224, DUF4883 0.53 37.0 3.15e-01 72.6% 77.9%
5ih0A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 40.0 3.71e-01 83.6% 95.7%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.51 40.0 3.10e-01 87.7% 90.9%
2bvbA00 2.60.120.710 Mainly Beta › Sandwich › Jelly Rolls › Toxoplasma gondii micronemal protein 1 TgMIC1 0.51 41.0 3.45e-01 93.2% 73.7%
ECOD (53)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3603357 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.85 55.0 6.27e-01 91.8% 87.3%
3299797 4.1.1.306 beta barrels › SH3 › SH3 › SH3 › SH3_VIII-1_N 0.83 51.0 5.61e-01 90.4% 76.7%
5033600 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 45.0 5.47e-01 82.2% 81.6%
4863023 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.83 48.0 5.80e-01 84.9% 89.6%
5000308 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.82 54.0 6.41e-01 91.8% 100.0%
3238405 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 53.0 6.07e-01 91.8% 89.1%
4121981 4.1.1.325 beta barrels › SH3 › SH3 › SH3 › KOW, KOW2_Spt5 0.82 54.0 4.48e-01 97.3% 40.0%
3701950 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 51.0 5.56e-01 90.4% 78.3%
3398496 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.80 53.0 6.04e-01 97.3% 90.9%
4579331 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 50.0 5.40e-01 91.8% 74.6%
3922426 4.1.1.363 beta barrels › SH3 › SH3 › SH3 › Agenet, Tudor_FRX1 0.79 51.0 4.24e-01 90.4% 40.0%
3578208 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 50.0 5.65e-01 89.0% 89.1%
3308545 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.75 49.0 3.73e-01 72.6% 30.6%
3298989 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 49.0 4.27e-01 90.4% 44.5%
3553983 4.1.1.233 beta barrels › SH3 › SH3 › SH3 › Myosin_VII_N 0.75 53.0 5.77e-01 90.4% 88.3%
3518287 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.71 59.0 4.98e-01 95.9% 55.7%
171891 4.1.1.110 beta barrels › SH3 › SH3 › SH3 › Tudor_FRX1 0.71 47.0 5.31e-01 95.9% 90.9%
3514556 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 50.0 5.09e-01 90.4% 75.7%
3928050 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 49.0 3.96e-01 90.4% 40.7%
3816455 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.67 56.0 4.63e-01 90.4% 59.2%
3300226 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.67 56.0 5.43e-01 90.4% 92.5%
4947695 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 52.0 5.23e-01 89.0% 84.0%
4101587 4.1.1.140 beta barrels › SH3 › SH3 › SH3 › Pif1_2B_dom 0.65 54.0 4.70e-01 87.7% 63.8%
5012053 4.1.1.40 beta barrels › SH3 › SH3 › SH3 › FeoA 0.64 54.0 5.44e-01 95.9% 91.9%
4107506 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.63 43.0 4.55e-01 82.2% 80.0%
3225816 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.63 52.0 5.30e-01 89.0% 92.9%
4038410 227.1.1.12 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Rad9 0.63 44.0 3.59e-01 74.0% 93.6%
3576443 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.63 53.0 5.42e-01 95.9% 97.1%
4127839 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.63 43.0 4.27e-01 83.6% 69.3%
4159666 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.60 40.0 3.59e-01 83.6% 46.8%
3660035 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.59 40.0 2.59e-01 71.2% 32.4%
3805791 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.59 42.0 2.77e-01 75.3% 29.2%
3217772 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 50.0 4.77e-01 95.9% 80.0%
3328675 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.58 42.0 2.69e-01 75.3% 28.4%
3426915 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.58 43.0 2.78e-01 76.7% 28.3%
4208450 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 39.0 4.28e-01 71.2% 85.0%
3456085 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 42.0 2.69e-01 76.7% 29.9%
4068978 325.1.7.0 a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.57 38.0 3.86e-01 83.6% 69.3%
3312438 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.57 41.0 2.69e-01 76.7% 27.7%
3677016 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.56 41.0 2.65e-01 76.7% 27.6%
3379673 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.56 41.0 2.75e-01 75.3% 33.7%
3365912 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.56 44.0 2.60e-01 84.9% 20.9%
3626615 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.56 46.0 4.03e-01 90.4% 98.2%
3614284 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.55 41.0 2.67e-01 82.2% 52.6%
3605452 2003.1.2.157 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Oxidored_FMN 0.54 44.0 2.62e-01 87.7% 27.9%
3597608 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.53 45.0 3.44e-01 90.4% 95.6%
3953859 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 40.0 4.20e-01 79.5% 100.0%
3432069 206.1.1.74 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, PK_Tyr_Ser-Thr 0.53 38.0 2.25e-01 76.7% 15.9%
3526234 206.1.1.14 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › ABC1 0.52 38.0 2.45e-01 76.7% 27.0%
None 0.52 39.0 2.76e-01 78.1% 47.6%
3613584 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 41.0 2.58e-01 87.7% 96.2%
4213134 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 34.0 2.91e-01 72.6% 39.2%
3947367 206.1.1.35 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH_6_hur 0.51 37.0 2.52e-01 78.1% 26.4%