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LSDeep1_scaffold_42_prodigal-single.1__X__X__00058
Bact-VirLSDeep1_scaffold_42_prodigal-single.1__X__X__00058
Identity
- Kingdom:
- phage
Quality
69.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-55
Domain cluster:
rep: IMGVR_UViG_3300010353_000095-3300010353-Ga0116236_100379242__D7-57
CATH (18)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2hjqA01 | 3.40.5.20 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › YqbF domain | 0.76 | 60.0 | 6.29e-01 | 100.0% | 100.0% |
| 1bdyA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.69 | 60.0 | 4.64e-01 | 100.0% | 95.9% |
| 4oifA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.65 | 42.0 | 4.03e-01 | 79.2% | 56.5% |
| 2f2hA03 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.62 | 43.0 | 4.52e-01 | 88.7% | 83.3% |
| 3cjxA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 51.0 | 3.84e-01 | 100.0% | 36.0% |
| 1iv8A05 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.61 | 40.0 | 3.82e-01 | 88.7% | 54.5% |
| 3h20A01 | 3.30.1490.240 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › RepB DNA-primase, N-terminal domain | 0.61 | 46.0 | 4.34e-01 | 100.0% | 68.2% |
| 2hvfA00 | 3.40.5.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › Ribosomal protein L9, N-terminal domain | 0.60 | 42.0 | 4.23e-01 | 96.2% | 76.9% |
| 2ct4A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.60 | 51.0 | 4.76e-01 | 100.0% | 87.1% |
| 2cveA02 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.59 | 47.0 | 4.47e-01 | 96.2% | 95.5% |
| 4b6dB00 | 3.30.60.20 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.56 | 35.0 | 3.50e-01 | 73.6% | 59.6% |
| 1p2fA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 39.0 | 3.42e-01 | 84.9% | 91.6% |
| 2hoxA03 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.54 | 39.0 | 3.30e-01 | 86.8% | 90.3% |
| 4cbgD02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.53 | 38.0 | 2.90e-01 | 84.9% | 49.1% |
| 3l4jA04 | 3.30.1360.40 | Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › | 0.53 | 41.0 | 3.41e-01 | 88.7% | 70.6% |
| 4gxbA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.52 | 37.0 | 3.17e-01 | 100.0% | 43.3% |
| 2y8yA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.52 | 42.0 | 3.46e-01 | 100.0% | 94.8% |
| 1mw7A02 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.52 | 40.0 | 3.63e-01 | 100.0% | 87.4% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5078669 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.88 | 80.0 | 7.72e-01 | 100.0% | 98.3% |
| 5033467 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.84 | 67.0 | 7.02e-01 | 96.2% | 97.9% |
| 4988095 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.78 | 66.0 | 6.79e-01 | 98.1% | 100.0% |
| 5024995 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.77 | 64.0 | 6.44e-01 | 100.0% | 92.5% |
| 4932061 | 4076.4.1.0 ↗ | a+b two layers › L9 N-domain-like › primase chain A, C-terminal domain › primase chain A, C-terminal domain | 0.75 | 58.0 | 6.11e-01 | 94.3% | 100.0% |
| 4956454 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.74 | 58.0 | 5.79e-01 | 100.0% | 83.6% |
| 3593781 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.73 | 59.0 | 5.92e-01 | 100.0% | 89.1% |
| 3683742 | 4076.3.1.8 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain › PSF2_N | 0.72 | 55.0 | 5.32e-01 | 96.2% | 75.0% |
| 5023430 | 3529.1.1.0 ↗ | beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain | 0.72 | 61.0 | 5.92e-01 | 100.0% | 86.7% |
| 5083883 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.70 | 53.0 | 5.62e-01 | 100.0% | 100.0% |
| 4031645 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.69 | 58.0 | 5.92e-01 | 100.0% | 100.0% |
| 3959955 | 304.163.1.3 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 | 0.62 | 47.0 | 4.99e-01 | 100.0% | 97.8% |
| 3721162 | 10.12.1.49 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Cupin_7 | 0.61 | 49.0 | 3.93e-01 | 100.0% | 42.5% |
| 5051424 | 304.4.1.3 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › YCII | 0.60 | 52.0 | 4.39e-01 | 100.0% | 90.5% |
| 3189679 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.60 | 48.0 | 3.78e-01 | 100.0% | 39.2% |
| 3546349 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.59 | 45.0 | 3.80e-01 | 100.0% | 47.0% |
| 3935404 | 221.1.1.76 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 | 0.59 | 46.0 | 3.90e-01 | 100.0% | 51.1% |
| 4321822 | 304.56.1.2 ↗ | a+b two layers › Alpha-beta plaits › CRISPR associated protein Cas2-like › CRISPR associated protein Cas2-like › CRISPR_Cas2 | 0.58 | 47.0 | 4.27e-01 | 100.0% | 78.8% |
| 4797685 | 304.126.1.1 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in vacuolar ATP synthase subunit C › ferredoxin-like domain in vacuolar ATP synthase subunit C › V_ATPase_I | 0.57 | 46.0 | 3.73e-01 | 94.3% | 66.4% |
| 3540023 | 382.1.1.1 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › UPAR_LY6 | 0.56 | 45.0 | 3.91e-01 | 100.0% | 55.6% |
| 3348024 | 109.4.1.583 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi | 0.56 | 44.0 | 3.30e-01 | 92.5% | 60.7% |
| 3424914 | 109.4.1.583 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi | 0.54 | 44.0 | 2.79e-01 | 100.0% | 41.8% |
| 3826676 | 109.4.1.583 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi | 0.54 | 43.0 | 2.75e-01 | 100.0% | 40.9% |
| 3368067 | 109.4.1.583 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › DNA_pol_phi | 0.53 | 43.0 | 2.74e-01 | 98.1% | 27.1% |
| 3923319 | 2484.1.1.13 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T | 0.52 | 38.0 | 2.66e-01 | 88.7% | 45.5% |
D2
medium
residues 100-170
Domain cluster:
representative