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LSDeep1_scaffold_42_prodigal-single.1__X__X__00117
Bact-VirLSDeep1_scaffold_42_prodigal-single.1__X__X__00117
Identity
- Kingdom:
- phage
Quality
79.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 105-220
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5nfmA00 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.71 | 43.0 | 5.24e-01 | 72.4% | 94.7% |
| 4isbB02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.69 | 44.0 | 4.57e-01 | 72.4% | 69.2% |
| 2y27A02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.68 | 43.0 | 4.58e-01 | 73.3% | 71.8% |
| 3e7wA02 | 3.30.300.30 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › ANL, C-terminal domain | 0.67 | 42.0 | 4.36e-01 | 73.3% | 66.7% |
| 2mcqA01 | 3.30.300.90 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › BolA-like | 0.65 | 40.0 | 4.82e-01 | 72.4% | 94.7% |
| 2z51A02 | 3.30.300.130 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Fe-S cluster assembly (FSCA) | 0.64 | 40.0 | 4.80e-01 | 73.3% | 100.0% |
| 6ywnA01 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.61 | 43.0 | 4.44e-01 | 72.4% | 89.8% |
| 2dyjA00 | 3.30.300.20 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain | 0.59 | 40.0 | 4.45e-01 | 72.4% | 89.0% |
| 1p7lA03 | 3.30.300.10 | Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › | 0.59 | 41.0 | 4.31e-01 | 72.4% | 82.1% |
| 7qprA02 | 3.30.460.10 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 | 0.58 | 40.0 | 3.88e-01 | 72.4% | 77.8% |
| 6xssA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.58 | 30.0 | 3.66e-01 | 84.5% | 81.2% |
| 1ofuA02 | 3.30.1330.20 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Tubulin/FtsZ, C-terminal domain | 0.56 | 31.0 | 3.45e-01 | 91.4% | 67.7% |
| 3q9dB01 | 1.20.58.1050 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.51 | 37.0 | 4.19e-01 | 88.8% | 98.9% |
| 1bdgA01 | 3.40.367.20 | Alpha Beta › 3-Layer(aba) Sandwich › Hexokinase; domain 1 › | 0.51 | 42.0 | 3.18e-01 | 88.8% | 96.1% |
| 1fiuA00 | 3.40.50.10010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Type-2 restriction enzyme NgoMIV | 0.51 | 41.0 | 3.19e-01 | 90.5% | 74.5% |
| 2f33A01 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.51 | 29.0 | 3.45e-01 | 83.6% | 88.7% |
ECOD (32)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5003241 | 102.7.1.1 ↗ | alpha arrays › HhH/H2TH › Baseplate wedge protein gp7 domain IV › Baseplate wedge protein gp7 domain IV › Tail_P2_I | 0.79 | 65.0 | 6.60e-01 | 97.4% | 87.8% |
| 4932704 | 327.11.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_2 | 0.72 | 44.0 | 4.74e-01 | 72.4% | 71.0% |
| 3991615 | 327.2.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA | 0.71 | 48.0 | 5.13e-01 | 74.1% | 79.0% |
| 4943767 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.71 | 44.0 | 4.57e-01 | 73.3% | 66.4% |
| 4046978 | 327.2.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA | 0.70 | 46.0 | 4.98e-01 | 72.4% | 78.0% |
| 3700201 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.68 | 42.0 | 5.05e-01 | 73.3% | 91.3% |
| 4056044 | 327.4.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N | 0.68 | 45.0 | 4.91e-01 | 72.4% | 82.1% |
| 4432583 | 327.4.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N | 0.68 | 43.0 | 4.94e-01 | 72.4% | 87.1% |
| 4133380 | 327.4.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N | 0.68 | 44.0 | 5.16e-01 | 70.7% | 95.0% |
| 4220601 | 327.4.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N | 0.67 | 43.0 | 5.09e-01 | 70.7% | 95.0% |
| 5002918 | 327.7.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Cation efflux protein cytoplasmic domain-like › Cation efflux protein cytoplasmic domain-like › ZT_dimer | 0.67 | 42.0 | 4.84e-01 | 72.4% | 88.0% |
| 4092189 | 327.11.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) › KH_2 | 0.66 | 46.0 | 4.63e-01 | 73.3% | 71.3% |
| 4437921 | 327.4.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › YhbC-like, N-terminal domain › YhbC-like, N-terminal domain › RimP_N | 0.66 | 44.0 | 4.84e-01 | 74.1% | 83.2% |
| 5004556 | 327.20.1.2 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Baseplate structural protein gp6 C-terminal domain I › Baseplate structural protein gp6 C-terminal domain I › PF26078 | 0.65 | 52.0 | 5.62e-01 | 86.2% | 98.0% |
| 4049903 | 327.2.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA | 0.65 | 46.0 | 5.14e-01 | 74.1% | 93.3% |
| 4322533 | 327.11.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Prokaryotic type KH domain (KH-domain type II) | 0.65 | 43.0 | 4.49e-01 | 73.3% | 71.8% |
| 5033721 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.64 | 43.0 | 4.52e-01 | 73.3% | 75.2% |
| 3661094 | 327.2.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA | 0.64 | 46.0 | 4.99e-01 | 74.1% | 89.5% |
| 4012907 | 327.2.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like | 0.64 | 45.0 | 4.65e-01 | 72.4% | 79.6% |
| 3787563 | 327.2.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › BolA-like › BolA-like › BolA | 0.63 | 45.0 | 4.73e-01 | 73.3% | 82.9% |
| 4975902 | 327.3.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain | 0.63 | 44.0 | 4.67e-01 | 72.4% | 87.6% |
| 4943111 | 327.3.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › GMP synthetase C-terminal dimerisation domain › GMP synthetase C-terminal dimerisation domain › GMP_synt_C | 0.63 | 44.0 | 4.48e-01 | 72.4% | 80.9% |
| 3339924 | 327.5.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins | 0.62 | 44.0 | 4.22e-01 | 73.3% | 63.7% |
| 4679606 | 327.10.1.0 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › Ribosome-binding factor A (RbfA)-related › Ribosome-binding factor A (RbfA)-related | 0.61 | 41.0 | 4.62e-01 | 72.4% | 88.9% |
| 5033079 | 7584.1.1.11 ↗ | a/b three-layered sandwiches › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › Rossmann-like domain in Acetyl-CoA synthetase-like proteins › PF27533 | 0.60 | 43.0 | 2.84e-01 | 74.1% | 19.8% |
| 4928329 | 327.17.1.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › S-adenosylmethionine synthetase › S-adenosylmethionine synthetase › S-AdoMet_synt_N | 0.60 | 42.0 | 3.16e-01 | 75.0% | 30.8% |
| 3427123 | 327.5.1.6 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › a+b domain in acetyl-CoA synthetase-like proteins › a+b domain in acetyl-CoA synthetase-like proteins › AMP-dom_DIP2-like | 0.59 | 42.0 | 4.11e-01 | 73.3% | 68.8% |
| 4040543 | 865.1.1.1 ↗ | beta complex topology › PheT/TilS domain › PheT/TilS domain › PheT/TilS domain › B3_4 | 0.56 | 47.0 | 3.92e-01 | 93.1% | 98.6% |
| 3362831 | 3186.1.1.0 ↗ | a+b two layers › C-terminal domain of FliK › C-terminal domain of FliK › C-terminal domain of FliK | 0.56 | 47.0 | 4.61e-01 | 92.2% | 99.2% |
| 4928237 | 131.1.1.0 ↗ | alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like | 0.53 | 43.0 | 3.82e-01 | 87.9% | 77.6% |
| 3495011 | 213.1.1.0 ↗ | a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) | 0.52 | 42.0 | 3.45e-01 | 89.7% | 88.9% |
| 3788927 | 219.1.1.16 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C48 | 0.52 | 42.0 | 3.29e-01 | 86.2% | 41.5% |
D2
medium
residues 9-104
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3o60A00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.70 | 48.0 | 3.83e-01 | 82.3% | 37.4% |
| 4w4kA00 | 1.10.287.850 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HP0062-like domain | 0.64 | 38.0 | 4.14e-01 | 90.6% | 70.7% |
| 6n8eA04 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.61 | 41.0 | 3.08e-01 | 81.2% | 27.7% |
| 4nsmA00 | 6.10.250.2770 | Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.60 | 37.0 | 4.23e-01 | 85.4% | 83.1% |
| 1zpyA00 | 6.10.140.1960 | Special › Helix non-globular › Helix Hairpins › | 0.59 | 39.0 | 4.07e-01 | 92.7% | 71.4% |
| 3nxcA00 | 1.10.357.10 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 | 0.58 | 43.0 | 3.59e-01 | 80.2% | 45.2% |
| 1x04A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.56 | 40.0 | 3.10e-01 | 84.4% | 35.5% |
| 7zxkC01 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 40.0 | 3.40e-01 | 78.1% | 100.0% |
| 1kqfC00 | 1.20.950.20 | Mainly Alpha › Up-down Bundle › Fumarate Reductase Cytochrome B subunit › Transmembrane di-heme cytochromes, Chain C | 0.53 | 42.0 | 3.24e-01 | 85.4% | 74.1% |
| 1werA01 | 1.10.506.10 | Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 | 0.52 | 42.0 | 3.55e-01 | 92.7% | 67.6% |
| 1i6zA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.51 | 37.0 | 3.36e-01 | 87.5% | 54.8% |
| 3fhnA03 | 1.10.357.100 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Dsl1p vesicle tethering complex, Tip20p subunit, domain C | 0.51 | 45.0 | 3.73e-01 | 99.0% | 57.5% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4514735 | 1049.2.1.4 ↗ | alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › Baseplate_J | 0.71 | 57.0 | 4.45e-01 | 100.0% | 42.1% |
| 3973303 | 1049.2.1.3 ↗ | alpha duplicates or obligate multimers › Baseplate wedge protein gp7 helical domain-like › Baseplate wedge protein gp6 helical domain › Baseplate wedge protein gp6 helical domain › PF26776 | 0.68 | 56.0 | 5.31e-01 | 100.0% | 73.9% |
| 4520394 | 5063.1.1.1 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › PSI_PSAK | 0.64 | 44.0 | 5.06e-01 | 78.1% | 98.6% |
| 3596560 | 3291.1.1.0 ↗ | alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related | 0.64 | 52.0 | 4.82e-01 | 88.5% | 69.7% |
| 3739839 | 5063.1.1.0 ↗ | alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK | 0.62 | 46.0 | 4.43e-01 | 78.1% | 88.2% |
| 5013534 | 605.1.1.0 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase | 0.62 | 38.0 | 3.24e-01 | 86.5% | 38.7% |
| 3347379 | 3470.1.1.26 ↗ | extended segments › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › Glycophorin-A transmembrane domain › DUF543 | 0.62 | 38.0 | 4.49e-01 | 72.9% | 92.3% |
| 4149728 | 547.1.1.1 ↗ | alpha duplicates or obligate multimers › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › Glutamyl tRNA-reductase dimerization domain › GlutR_dimer | 0.61 | 40.0 | 4.27e-01 | 84.4% | 78.8% |
| 3389329 | 5076.1.1.1 ↗ | alpha complex topology › Mitochondrial ADP/ATP carrier-like › Mitochondrial ADP/ATP carrier › Mitochondrial ADP/ATP carrier › Mito_carr | 0.61 | 48.0 | 3.33e-01 | 84.4% | 56.2% |
| 5017842 | 5058.1.1.0 ↗ | alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region | 0.60 | 40.0 | 4.24e-01 | 94.8% | 76.5% |
| 5061943 | 101.11.1.0 ↗ | alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 | 0.60 | 52.0 | 4.84e-01 | 99.0% | 80.0% |
| 3930080 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.59 | 53.0 | 4.24e-01 | 99.0% | 88.4% |
| 3692508 | 4120.1.1.0 ↗ | few secondary structure elements › Tim10/DDP › Tim10/DDP › Tim10/DDP | 0.59 | 42.0 | 4.16e-01 | 81.2% | 71.0% |
| 3509295 | 101.1.1.76 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Integrase_H2C2 | 0.59 | 49.0 | 4.09e-01 | 88.5% | 96.2% |
| 3880922 | 6108.1.1.1 ↗ | alpha bundles › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Middle and GTPase effector domains in dynamin-related proteins › Dynamin_M,GED | 0.58 | 46.0 | 3.28e-01 | 89.6% | 27.7% |
| 4188764 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.57 | 35.0 | 3.32e-01 | 97.9% | 49.2% |
| 2832675 | 2006.1.4.8 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › PIN_5 | 0.57 | 46.0 | 3.60e-01 | 87.5% | 89.3% |
| 5052614 | 3831.1.1.0 ↗ | alpha bundles › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 › Secreted protein of unknown function DUF1311 | 0.57 | 44.0 | 4.22e-01 | 82.3% | 85.5% |
| 4416476 | 1079.1.1.10 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Ycf1 | 0.53 | 45.0 | 3.54e-01 | 93.8% | 77.6% |
| 3903423 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.53 | 39.0 | 3.81e-01 | 77.1% | 82.9% |
| 4346887 | 605.1.1.1 ↗ | alpha duplicates or obligate multimers › ROP-like › Homodimeric domain of signal transducing histidine kinase › Homodimeric domain of signal transducing histidine kinase › HisKA | 0.52 | 37.0 | 4.18e-01 | 93.8% | 96.0% |
D3
medium
residues 261-304_398-412
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4jcwA01 | 2.40.40.10 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › RlpA-like domain | 0.63 | 54.0 | 4.55e-01 | 100.0% | 96.2% |
| 1aw8B00 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.61 | 46.0 | 4.15e-01 | 88.1% | 74.7% |
| 5jm6A02 | 2.30.250.10 | Mainly Beta › Roll › Aminopeptidase i, Domain 2 › Aminopeptidase i, Domain 2 | 0.60 | 48.0 | 3.82e-01 | 96.6% | 97.9% |
| 4ecnA02 | 2.60.40.3540 | Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 | 0.60 | 48.0 | 3.88e-01 | 91.5% | 68.9% |
| 7uwjC02 | 2.60.40.2150 | Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 2 | 0.59 | 49.0 | 4.29e-01 | 100.0% | 71.1% |
| 2ln7A00 | 2.40.260.10 | Mainly Beta › Beta Barrel › Sortase; Chain: A; › Sortase | 0.57 | 41.0 | 3.16e-01 | 78.0% | 59.2% |
| 4hslA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.57 | 42.0 | 3.08e-01 | 79.7% | 39.8% |
| 2dh2A02 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.56 | 41.0 | 3.70e-01 | 83.1% | 90.1% |
| 3ht1A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.56 | 41.0 | 3.12e-01 | 78.0% | 47.9% |
| 2x4jA01 | 2.30.30.600 | Mainly Beta › Roll › SH3 type barrels. › | 0.56 | 40.0 | 3.47e-01 | 79.7% | 80.4% |
| 3zn6A02 | 2.60.40.3410 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.55 | 45.0 | 4.13e-01 | 100.0% | 92.0% |
| 2ed8A01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 47.0 | 4.21e-01 | 100.0% | 77.9% |
| 6ea2A04 | 2.60.40.1840 | Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain | 0.55 | 46.0 | 4.04e-01 | 100.0% | 85.4% |
| 3bpnC03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 43.0 | 3.87e-01 | 100.0% | 80.2% |
| 3w42A00 | 3.60.40.10 | Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain | 0.55 | 40.0 | 2.86e-01 | 81.4% | 62.8% |
| 4n0rA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 45.0 | 4.14e-01 | 100.0% | 81.2% |
| 1x5aA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.54 | 46.0 | 4.06e-01 | 100.0% | 76.9% |
| 1js8B02 | 2.60.310.10 | Mainly Beta › Sandwich › Hemocyanin; Chain: A, domain 2 › Haemocyanin C-terminal domain | 0.54 | 42.0 | 3.64e-01 | 93.2% | 75.2% |
| 4brvA00 | 2.60.40.730 | Mainly Beta › Sandwich › Immunoglobulin-like › SOR catalytic domain | 0.53 | 45.0 | 3.67e-01 | 100.0% | 66.9% |
| 8bvoA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 44.0 | 4.04e-01 | 100.0% | 82.6% |
| 3l5hA04 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 45.0 | 4.18e-01 | 100.0% | 94.9% |
| 4yarA02 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.53 | 44.0 | 3.60e-01 | 98.3% | 91.9% |
| 2wanA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 43.0 | 3.76e-01 | 100.0% | 66.7% |
| 3nngA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 43.0 | 3.36e-01 | 100.0% | 89.5% |
| 2yuxA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 3.70e-01 | 100.0% | 67.6% |
| 2jllA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 43.0 | 3.79e-01 | 100.0% | 75.5% |
| 3l4yA04 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.52 | 36.0 | 3.12e-01 | 72.9% | 81.6% |
| 6rpxA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 45.0 | 4.04e-01 | 100.0% | 83.5% |
| 2eefA01 | 2.60.40.2440 | Mainly Beta › Sandwich › Immunoglobulin-like › Carbohydrate binding type-21 domain | 0.52 | 43.0 | 3.53e-01 | 100.0% | 82.7% |
| 1df0A03 | 2.60.120.380 | Mainly Beta › Sandwich › Jelly Rolls › | 0.52 | 43.0 | 3.45e-01 | 100.0% | 94.0% |
| 3eo6A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 44.0 | 3.69e-01 | 96.6% | 60.4% |
| 7bysA02 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 42.0 | 3.45e-01 | 96.6% | 77.9% |
| 4n2kA01 | 2.60.40.1860 | Mainly Beta › Sandwich › Immunoglobulin-like › Protein-arginine deiminase, N-terminal domain | 0.52 | 41.0 | 3.42e-01 | 94.9% | 86.6% |
| 2w3jA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.51 | 41.0 | 3.33e-01 | 100.0% | 84.7% |
| 2eqjA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.50 | 36.0 | 3.49e-01 | 74.6% | 86.4% |
| 3kwuA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.50 | 41.0 | 3.18e-01 | 91.5% | 100.0% |
| 4npjB01 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.50 | 34.0 | 2.71e-01 | 71.2% | 65.0% |
| 1loxA02 | 2.60.60.20 | Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain | 0.50 | 40.0 | 3.35e-01 | 91.5% | 91.0% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3602028 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 61.0 | 4.48e-01 | 100.0% | 91.5% |
| 3804239 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.56 | 47.0 | 4.10e-01 | 96.6% | 66.3% |
| 4942247 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.54 | 46.0 | 3.79e-01 | 98.3% | 92.7% |
| 3537641 | 109.3.1.96 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank+Ank_2+Ank_4 | 0.53 | 44.0 | 2.77e-01 | 94.9% | 30.7% |
| 5063985 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.53 | 43.0 | 3.97e-01 | 93.2% | 77.5% |
| 3581058 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.53 | 45.0 | 3.92e-01 | 100.0% | 82.1% |
| 3934311 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 38.0 | 3.69e-01 | 81.4% | 88.6% |
| 3242723 | 10.10.1.1 ↗ | beta sandwiches › jelly-roll › Lipase/lipooxygenase domain (PLAT/LH2 domain) › Lipase/lipooxygenase domain (PLAT/LH2 domain) › PLAT | 0.52 | 44.0 | 3.54e-01 | 98.3% | 81.6% |
| 3690842 | 12.6.1.0 ↗ | beta sandwiches › Glycosyl hydrolase domain-like › Glycoside hydrolase family 127 middle domain-related › Glycoside hydrolase family 127 middle domain-related | 0.52 | 42.0 | 3.87e-01 | 93.2% | 86.3% |
| 3549361 | 11.1.1.794 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › LIFR_D4 | 0.52 | 42.0 | 3.69e-01 | 100.0% | 74.3% |
| 4000177 | 10.7.1.0 ↗ | beta sandwiches › jelly-roll › Hypothetical protein TM1070 › Hypothetical protein TM1070 | 0.52 | 45.0 | 3.96e-01 | 100.0% | 76.7% |
| 5061073 | 11.1.1.103 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB | 0.52 | 42.0 | 3.40e-01 | 100.0% | 76.3% |
| 5045353 | 10.1.2.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) | 0.51 | 44.0 | 3.61e-01 | 100.0% | 61.7% |
| 4944073 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.51 | 42.0 | 3.56e-01 | 100.0% | 74.8% |
| 3577849 | 11.1.1.2 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 | 0.51 | 41.0 | 3.66e-01 | 100.0% | 76.0% |
| 3535189 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.51 | 39.0 | 3.03e-01 | 89.8% | 49.0% |
| 3415568 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.51 | 43.0 | 3.23e-01 | 98.3% | 53.5% |
| 3785564 | 10.32.1.244 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF29989 | 0.51 | 40.0 | 3.35e-01 | 94.9% | 84.2% |
| 3884048 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.50 | 43.0 | 3.43e-01 | 98.3% | 55.2% |
| 3892939 | 10.32.1.229 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › PF27640 | 0.50 | 40.0 | 3.23e-01 | 96.6% | 97.9% |
| 384273 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.50 | 41.0 | 3.17e-01 | 91.5% | 100.0% |
| 3542698 | 11.2.1.114 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2, C2-C2_1 | 0.50 | 39.0 | 2.56e-01 | 91.5% | 25.1% |
D4
medium
residues 305-397
Domain cluster:
representative
CATH (23)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2w5eA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.67 | 45.0 | 5.10e-01 | 87.1% | 96.9% |
| 1lvmA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.66 | 49.0 | 4.74e-01 | 84.9% | 69.8% |
| 8b6zA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 45.0 | 4.74e-01 | 72.0% | 84.1% |
| 1zunB02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 46.0 | 4.74e-01 | 75.3% | 81.1% |
| 4g6iB01 | 2.40.30.20 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.64 | 44.0 | 4.55e-01 | 80.6% | 74.2% |
| 1r5bA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.64 | 46.0 | 4.75e-01 | 75.3% | 79.8% |
| 3tvjB02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 48.0 | 4.65e-01 | 84.9% | 80.4% |
| 2rdeA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.61 | 51.0 | 4.84e-01 | 91.4% | 83.8% |
| 1a5iA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 49.0 | 4.60e-01 | 89.2% | 80.5% |
| 3tk9A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 48.0 | 4.61e-01 | 84.9% | 80.4% |
| 2wzpP01 | 2.40.30.210 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › | 0.61 | 48.0 | 4.58e-01 | 86.0% | 99.1% |
| 5f8zA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 48.0 | 4.54e-01 | 87.1% | 81.2% |
| 8e7cA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.60 | 46.0 | 4.92e-01 | 83.9% | 97.5% |
| 6j0qA02 | 2.40.30.120 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses | 0.59 | 43.0 | 4.12e-01 | 76.3% | 86.2% |
| 1ltoA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.59 | 48.0 | 4.56e-01 | 87.1% | 81.7% |
| 2ynaA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.58 | 46.0 | 4.78e-01 | 87.1% | 94.3% |
| 4he6A00 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.57 | 43.0 | 4.38e-01 | 80.6% | 85.4% |
| 5h7jA02 | 2.40.30.10 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors | 0.55 | 42.0 | 4.10e-01 | 83.9% | 84.3% |
| 3ne5B01 | 2.40.420.20 | Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › | 0.55 | 34.0 | 3.51e-01 | 81.7% | 66.3% |
| 2v4dE01 | 2.40.420.20 | Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › | 0.52 | 32.0 | 3.41e-01 | 81.7% | 69.0% |
| 3ougA00 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.52 | 40.0 | 3.86e-01 | 91.4% | 72.6% |
| 3nrlA00 | 2.40.10.390 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.51 | 29.0 | 3.27e-01 | 89.2% | 75.0% |
| 1aw8B00 | 2.40.40.20 | Mainly Beta › Beta Barrel › Barwin-like endoglucanases › | 0.51 | 42.0 | 4.24e-01 | 93.5% | 92.3% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4027927 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.65 | 48.0 | 4.84e-01 | 77.4% | 78.9% |
| 143 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.64 | 46.0 | 4.70e-01 | 75.3% | 79.3% |
| 4108526 | 1.1.7.19 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 | 0.63 | 45.0 | 4.56e-01 | 75.3% | 78.9% |
| 3974181 | 1.1.5.88 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PF29489 | 0.62 | 51.0 | 5.21e-01 | 89.2% | 94.4% |
| 1117606 | 1.1.13.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_N | 0.62 | 48.0 | 4.30e-01 | 83.9% | 99.3% |
| 5013200 | 1.1.5.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › DUF447_N | 0.61 | 50.0 | 4.37e-01 | 90.3% | 82.9% |
| 4984273 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.60 | 43.0 | 4.43e-01 | 74.2% | 83.5% |
| 3438163 | 4135.1.1.1 ↗ | beta duplicates or obligate multimers › MAL13P1.257-like › MAL13P1.257-like › MAL13P1.257-like › CXXC_Zn-b_euk | 0.59 | 41.0 | 3.42e-01 | 73.1% | 95.8% |
| 3580932 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.58 | 46.0 | 3.37e-01 | 89.2% | 30.9% |
| 3990036 | 1.1.7.83 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › YknX_C | 0.54 | 33.0 | 3.49e-01 | 81.7% | 67.1% |
| 3971760 | 1.1.7.80 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RND-MFP_C | 0.52 | 33.0 | 3.55e-01 | 81.7% | 75.0% |
| 4503580 | 1.1.7.83 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › YknX_C | 0.52 | 32.0 | 3.46e-01 | 83.9% | 72.5% |
| 5061247 | 11.1.1.237 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › MG4 | 0.52 | 39.0 | 3.82e-01 | 80.6% | 98.0% |