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LSDeep1_scaffold_42_prodigal-single.1__X__X__00127
Bact-VirLSDeep1_scaffold_42_prodigal-single.1__X__X__00127
Identity
- Kingdom:
- phage
Quality
77.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-80
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2gw6A01 | 3.40.1350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › | 0.66 | 44.0 | 3.82e-01 | 75.3% | 44.8% |
| 3fvyA03 | 3.30.70.2600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.60 | 35.0 | 3.55e-01 | 100.0% | 57.3% |
| 5oomJ01 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.60 | 44.0 | 4.69e-01 | 100.0% | 93.9% |
| 1vwxP00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.55 | 47.0 | 3.88e-01 | 100.0% | 79.1% |
| 2z04B03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.55 | 46.0 | 3.57e-01 | 100.0% | 39.8% |
| 1aroP05 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.55 | 44.0 | 3.34e-01 | 90.9% | 49.3% |
| 1uzxA00 | 3.10.110.10 | Alpha Beta › Roll › Ubiquitin Conjugating Enzyme › Ubiquitin Conjugating Enzyme | 0.55 | 39.0 | 3.23e-01 | 96.1% | 41.4% |
| 2y3aA01 | 3.10.20.770 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.54 | 39.0 | 2.72e-01 | 77.9% | 26.4% |
| 5ek8A01 | 2.60.40.3330 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.53 | 40.0 | 3.42e-01 | 80.5% | 75.4% |
| 4k7cA01 | 3.90.70.10 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases | 0.53 | 43.0 | 2.74e-01 | 89.6% | 25.9% |
| 1fs7A01 | 1.10.1130.10 | Mainly Alpha › Orthogonal Bundle › Flavocytochrome C3; Chain A, domain 2 › Flavocytochrome C3; Chain A | 0.52 | 43.0 | 2.91e-01 | 94.8% | 47.3% |
| 3gw6D02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 36.0 | 2.86e-01 | 75.3% | 73.9% |
| 6qdws00 | 3.90.470.10 | Alpha Beta › Alpha-Beta Complex › Ribosomal Protein L22; Chain A › Ribosomal protein L22/L17 | 0.50 | 43.0 | 3.95e-01 | 100.0% | 81.7% |
| 4zg5A00 | 3.40.1210.10 | Alpha Beta › 3-Layer(aba) Sandwich › Stationary-phase Survival Protein Sure Homolog; Chain: A, › Survival protein SurE-like phosphatase/nucleotidase | 0.50 | 40.0 | 2.92e-01 | 92.2% | 91.5% |
ECOD (18)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3284913 | 3781.1.1.1 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain › Ribosomal_L11_N | 0.62 | 45.0 | 4.77e-01 | 100.0% | 92.3% |
| 3846535 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.61 | 39.0 | 3.73e-01 | 84.4% | 54.4% |
| 4991161 | 2.21.1.0 ↗ | beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) | 0.59 | 51.0 | 4.68e-01 | 100.0% | 76.2% |
| 5041736 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 33.0 | 3.40e-01 | 72.7% | 58.7% |
| 4957877 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.56 | 40.0 | 4.23e-01 | 94.8% | 84.3% |
| 4250601 | 186.1.1.0 ↗ | alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N | 0.56 | 43.0 | 3.32e-01 | 83.1% | 83.5% |
| 5018583 | 304.48.1.1 ↗ | a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 | 0.55 | 45.0 | 3.07e-01 | 94.8% | 68.6% |
| 4441043 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.54 | 42.0 | 3.33e-01 | 83.1% | 90.6% |
| 57748 | 4970.1.1.0 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I | 0.53 | 24.0 | 2.65e-01 | 94.8% | 44.6% |
| 4198 | 4970.1.1.3 ↗ | alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B_2 | 0.52 | 25.0 | 2.71e-01 | 93.5% | 47.7% |
| 5048677 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.52 | 38.0 | 3.30e-01 | 80.5% | 66.2% |
| 4958970 | 223.1.1.13 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_3 | 0.52 | 42.0 | 3.59e-01 | 89.6% | 82.4% |
| 4067342 | 5069.1.1.15 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cytochrom_C_asm | 0.52 | 44.0 | 2.94e-01 | 100.0% | 99.1% |
| 4980669 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.51 | 39.0 | 3.32e-01 | 81.8% | 48.5% |
| 3098534 | 101.1.1.20 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › CPSF_A | 0.51 | 35.0 | 3.05e-01 | 71.4% | 75.4% |
| 3634173 | 216.1.1.3 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › UEV | 0.51 | 41.0 | 3.29e-01 | 88.3% | 61.9% |
| 3254436 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.51 | 33.0 | 3.76e-01 | 79.2% | 94.5% |
| 3379619 | 328.12.1.0 ↗ | a+b two layers › IF3-like › IF3-like domain in Nudix hydrolase › IF3-like domain in Nudix hydrolase | 0.50 | 35.0 | 2.45e-01 | 72.7% | 49.8% |