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LSDeep1_scaffold_42_prodigal-single.1__X__X__00144

Bact-Vir

LSDeep1_scaffold_42_prodigal-single.1__X__X__00144

Identity

Kingdom:
phage

Quality

83.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 82-120
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1a62A01 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.90 80.0 7.61e-01 100.0% 84.8%
1e7lA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.87 75.0 6.76e-01 100.0% 70.9%
2qkwA00 1.20.1270.140 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AvrPto 0.80 59.0 4.39e-01 82.1% 81.2%
2hjqA02 1.10.720.10 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.77 65.0 5.98e-01 100.0% 73.6%
2zm5A02 1.10.20.140 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.76 62.0 5.23e-01 100.0% 73.6%
2kvdA02 1.10.720.30 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › SAP domain 0.73 62.0 5.50e-01 100.0% 70.7%
1n1cA02 1.20.1280.20 Mainly Alpha › Up-down Bundle › Monooxygenase › HscB, C-terminal domain 0.71 48.0 3.82e-01 71.8% 75.6%
1kblA05 1.20.80.30 Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › 0.70 58.0 4.55e-01 97.4% 79.8%
2riqA01 1.10.20.130 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › 0.69 56.0 4.89e-01 100.0% 65.2%
4u7bA01 1.10.10.1450 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.68 50.0 4.62e-01 79.5% 68.6%
3ip4C01 1.10.20.60 Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Glu-tRNAGln amidotransferase C subunit, N-terminal domain 0.66 44.0 4.27e-01 71.8% 59.1%
2m63A00 1.25.40.780 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.65 45.0 3.07e-01 74.4% 46.5%
3qsgA02 1.10.1040.10 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 0.62 50.0 3.70e-01 97.4% 90.4%
3nufB00 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.62 48.0 3.45e-01 84.6% 77.7%
3cnhB02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.58 45.0 3.78e-01 87.2% 73.5%
1n93X01 1.10.3040.10 Mainly Alpha › Orthogonal Bundle › borna disease virus nucleoprotein, domain 1 › borna disease virus nucleoprotein, domain 1 0.57 40.0 2.68e-01 82.1% 62.0%
3s5wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 40.0 2.40e-01 84.6% 25.9%
1ea0A02 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.56 44.0 2.52e-01 84.6% 66.5%
3f2bA05 6.10.50.10 Special › Helix non-globular › Insulin-like, subunit E › 0.56 38.0 3.61e-01 71.8% 70.8%
2ph5A02 3.30.360.30 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › homospermidine synthase like 0.55 44.0 2.69e-01 100.0% 59.8%
5nohA00 1.20.120.1350 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain 0.55 40.0 3.03e-01 100.0% 31.1%
3ermB00 1.10.10.710 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › PSPTO_1197 like 0.55 37.0 3.16e-01 71.8% 53.1%
4k35A04 1.20.5.420 Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › Immunoglobulin FC, subunit C 0.55 39.0 3.70e-01 79.5% 86.0%
2bnlC00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.55 39.0 2.83e-01 82.1% 44.8%
3ivtA02 1.10.238.260 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › 0.54 46.0 3.46e-01 100.0% 99.0%
1khcA02 1.10.720.50 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › PWWP, helical domain 0.53 40.0 3.61e-01 100.0% 68.1%
1gvnA00 1.10.8.130 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › 0.52 37.0 2.85e-01 74.4% 33.3%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4428371 130.1.1.3 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.94 85.0 8.08e-01 100.0% 86.7%
5053068 130.1.1.3 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.92 80.0 8.01e-01 97.4% 95.0%
4260463 130.1.1.3 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.92 83.0 7.90e-01 100.0% 86.7%
3797432 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.90 81.0 7.24e-01 100.0% 77.4%
3838872 130.1.1.3 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.90 80.0 7.09e-01 100.0% 70.9%
3943133 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.89 79.0 7.57e-01 100.0% 86.7%
4623858 130.1.1.3 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.88 78.0 7.49e-01 100.0% 86.7%
4433184 130.1.1.3 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.88 78.0 6.99e-01 100.0% 70.9%
3440159 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.88 78.0 5.99e-01 100.0% 45.9%
3253972 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.87 75.0 7.45e-01 97.4% 95.0%
3336810 130.1.1.3 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.87 76.0 7.32e-01 100.0% 86.7%
3127 130.1.1.7 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Endonuc-dimeris 0.87 75.0 6.81e-01 100.0% 72.2%
3715853 130.1.1.31 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › RNF34L-like_3rd 0.87 78.0 7.24e-01 100.0% 81.2%
3256790 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.87 75.0 6.32e-01 100.0% 58.5%
3254598 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.87 73.0 5.99e-01 94.9% 52.9%
3256360 130.1.1.1 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.86 73.0 6.73e-01 100.0% 74.0%
3570469 130.1.1.45 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › PF29669 0.86 66.0 6.89e-01 84.6% 94.3%
3172891 130.1.1.16 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.86 74.0 6.91e-01 100.0% 78.0%
3724166 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.86 74.0 6.32e-01 100.0% 60.0%
3934734 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.86 75.0 7.18e-01 100.0% 91.1%
4959048 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.86 75.0 6.97e-01 100.0% 80.0%
3102428 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.85 73.0 6.94e-01 100.0% 83.0%
3989397 3949.1.1.0 alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain 0.85 72.0 6.49e-01 100.0% 69.1%
3247921 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.85 74.0 6.46e-01 100.0% 65.0%
3611122 130.1.1.32 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP_RNF34_RFFL (DEPRECATED) 0.85 75.0 6.70e-01 100.0% 70.9%
3590596 130.1.1.3 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.85 74.0 7.08e-01 100.0% 86.7%
3568558 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.84 73.0 6.38e-01 100.0% 65.0%
3253259 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.84 70.0 7.01e-01 94.9% 92.5%
3190964 130.1.1.20 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › HeH 0.84 71.0 6.39e-01 100.0% 69.1%
3283288 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.83 62.0 6.56e-01 82.1% 94.1%
4113879 1.1.7.2 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 0.83 63.0 3.75e-01 84.6% 12.2%
3880529 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.83 72.0 6.09e-01 100.0% 60.0%
3440160 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.82 73.0 6.96e-01 100.0% 86.7%
3261240 130.1.1.1 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP 0.82 70.0 6.95e-01 97.4% 95.0%
3248928 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.81 70.0 6.29e-01 100.0% 70.9%
4207785 314.1.1.0 a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases 0.81 69.0 3.84e-01 100.0% 9.7%
3191284 130.1.1.16 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.80 67.0 6.31e-01 100.0% 78.0%
3467974 130.1.1.3 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.80 70.0 6.96e-01 100.0% 97.5%
3881355 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.80 66.0 6.24e-01 100.0% 82.0%
3191312 130.1.1.16 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.80 68.0 6.54e-01 100.0% 86.7%
4616848 130.1.1.3 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Rho_N 0.79 66.0 6.41e-01 97.4% 84.4%
3614169 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.79 68.0 5.94e-01 100.0% 66.7%
3472431 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.79 66.0 6.57e-01 100.0% 97.5%
3252664 130.1.1.31 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › RNF34L-like_3rd 0.79 66.0 6.04e-01 100.0% 70.9%
3690457 130.1.1.16 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.78 66.0 5.86e-01 100.0% 65.0%
3528983 376.1.1.0 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box 0.78 65.0 6.49e-01 97.4% 95.0%
3172901 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.77 59.0 6.02e-01 89.7% 100.0%
3480954 130.1.1.2 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › LEM 0.77 65.0 6.26e-01 100.0% 93.3%
3208160 130.1.1.16 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.77 64.0 6.02e-01 100.0% 78.0%
3198528 130.1.1.16 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Ish1 0.76 61.0 5.67e-01 100.0% 70.9%
1505698 130.1.1.8 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › ARMET_C 0.76 63.0 5.42e-01 97.4% 58.5%
3881311 130.1.1.32 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP_RNF34_RFFL (DEPRECATED) 0.76 62.0 6.08e-01 100.0% 86.7%
3520581 130.1.1.8 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › ARMET_C 0.76 63.0 6.07e-01 97.4% 84.4%
4590814 3949.1.1.1 alpha arrays › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › tRNA delta(2)-isopentenylpyrophosphate transferase helical insertion domain › IPPT 0.75 64.0 5.48e-01 100.0% 64.6%
3390715 130.1.1.10 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP30_Sin3_bdg 0.75 57.0 5.77e-01 92.3% 90.0%
4567937 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.74 61.0 5.76e-01 100.0% 82.0%
3699818 130.1.1.8 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › ARMET_C 0.73 60.0 5.88e-01 100.0% 86.7%
3666608 130.1.1.10 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP30_Sin3_bdg 0.73 58.0 5.23e-01 100.0% 63.3%
3714674 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.72 59.0 5.46e-01 100.0% 81.8%
3716587 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.72 59.0 5.43e-01 100.0% 74.5%
3507079 130.1.1.0 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif 0.72 54.0 5.39e-01 89.7% 82.5%
3650342 130.1.1.10 alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › SAP30_Sin3_bdg 0.71 54.0 5.15e-01 92.3% 78.0%
3361460 105.1.1.22 alpha duplicates or obligate multimers › HLH-like › HLH, helix-loop-helix DNA-binding domain › HLH, helix-loop-helix DNA-binding domain › bHLH_ILI 0.67 50.0 4.14e-01 84.6% 48.0%
4947024 4993.1.1.0 extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit 0.66 45.0 3.38e-01 74.4% 28.4%
4543541 101.8.1.2 alpha arrays › HTH › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › An anticodon-binding domain of class I aminoacyl-tRNA synthetases › Anticodon_2 0.65 52.0 3.59e-01 100.0% 32.1%
4955004 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.63 46.0 4.11e-01 82.1% 95.0%
4138369 4993.1.1.1 extended segments › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › Glu-tRNAGln amidotransferase C subunit › GatC 0.59 43.0 3.27e-01 74.4% 30.5%
4405869 101.1.2.451 alpha arrays › HTH › HTH › winged helix domain › NPR3 0.58 46.0 3.57e-01 89.7% 82.2%
5003101 4033.1.1.0 alpha arrays › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like › Acyl-CoA dehydrogenase N-terminal domain-like 0.55 41.0 3.54e-01 100.0% 71.2%
3220045 604.12.1.0 alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.53 37.0 2.74e-01 79.5% 91.5%