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LSDeep1_scaffold_42_prodigal-single.1__X__X__00186
Bact-VirLSDeep1_scaffold_42_prodigal-single.1__X__X__00186
Identity
- Kingdom:
- phage
Quality
80.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-86
Domain cluster:
representative
CATH (48)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3cedA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.80 | 61.0 | 5.49e-01 | 80.0% | 81.6% |
| 1kvkA02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.76 | 56.0 | 4.41e-01 | 77.3% | 95.9% |
| 2qmwA03 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.76 | 56.0 | 5.60e-01 | 77.3% | 100.0% |
| 2qrrA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.74 | 56.0 | 5.18e-01 | 81.3% | 82.5% |
| 2qswA00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.72 | 53.0 | 5.05e-01 | 78.7% | 85.6% |
| 3d68A01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.72 | 54.0 | 5.03e-01 | 80.0% | 79.3% |
| 1jb0D00 | 3.30.1470.10 | Alpha Beta › 2-Layer Sandwich › Photosystem 1 Reaction Centre Subunit Ii; Chain: D; › Photosystem I PsaD, reaction center subunit II | 0.70 | 53.0 | 4.33e-01 | 80.0% | 44.2% |
| 2jveA00 | 2.10.60.10 | Mainly Beta › Ribbon › CD59 › CD59 | 0.70 | 41.0 | 4.22e-01 | 82.7% | 60.6% |
| 1jqgA01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.69 | 52.0 | 4.95e-01 | 82.7% | 76.9% |
| 3n0vA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.68 | 50.0 | 4.84e-01 | 78.7% | 95.2% |
| 1owfA00 | 4.10.520.10 | Few Secondary Structures › Irregular › HU Protein; Chain A › IHF-like DNA-binding proteins | 0.67 | 29.0 | 2.67e-01 | 86.7% | 31.2% |
| 4aw7A01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.66 | 40.0 | 3.43e-01 | 82.7% | 39.0% |
| 2nyhA00 | 3.30.70.1240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › DOPA-like domains | 0.66 | 50.0 | 4.35e-01 | 81.3% | 70.7% |
| 2qz8A02 | 3.30.70.920 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Lrp/AsnC effector binding domain/regulation of amino acid metabolism (RAM) domain | 0.66 | 55.0 | 5.38e-01 | 90.7% | 92.6% |
| 3ce8A00 | 3.30.70.120 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.66 | 48.0 | 4.63e-01 | 80.0% | 88.8% |
| 3anwA02 | 3.40.5.50 | Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › | 0.66 | 46.0 | 5.12e-01 | 77.3% | 96.6% |
| 3tzyA02 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.65 | 50.0 | 5.14e-01 | 82.7% | 94.3% |
| 1ayeA01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.65 | 52.0 | 4.80e-01 | 89.3% | 73.7% |
| 2rilA00 | 3.30.70.100 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.63 | 47.0 | 4.38e-01 | 81.3% | 94.7% |
| 3eo6A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.62 | 47.0 | 4.18e-01 | 100.0% | 56.6% |
| 4dzdA02 | 3.30.70.1210 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Crispr-associated protein; domain 2 | 0.62 | 46.0 | 4.00e-01 | 81.3% | 97.6% |
| 2atzA00 | 3.90.920.20 | Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › HP0184-like | 0.62 | 46.0 | 3.55e-01 | 80.0% | 46.0% |
| 3es4A00 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.61 | 46.0 | 3.98e-01 | 100.0% | 51.7% |
| 7esdB01 | 2.60.40.350 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.60 | 43.0 | 4.07e-01 | 76.0% | 76.1% |
| 4icwA00 | 2.60.40.150 | Mainly Beta › Sandwich › Immunoglobulin-like › C2 domain | 0.60 | 46.0 | 3.91e-01 | 84.0% | 95.4% |
| 4ye5A01 | 3.90.1310.10 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › Penicillin-binding protein 2a (Domain 2) | 0.60 | 44.0 | 3.34e-01 | 80.0% | 51.1% |
| 3bcwA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.59 | 44.0 | 3.99e-01 | 100.0% | 57.7% |
| 2v5yA05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.58 | 37.0 | 3.42e-01 | 82.7% | 49.5% |
| 4k4kA02 | 2.60.40.2630 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 41.0 | 3.53e-01 | 76.0% | 99.2% |
| 3t2lA02 | 2.60.40.2630 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.57 | 40.0 | 3.29e-01 | 73.3% | 91.1% |
| 1t8rA01 | 3.30.1730.10 | Alpha Beta › 2-Layer Sandwich › amp nucleosidase, domain 1 › AMP nucleoside phosphorylase, N-terminal domain | 0.55 | 41.0 | 3.37e-01 | 82.7% | 62.9% |
| 4h3wA01 | 2.60.290.20 | Mainly Beta › Sandwich › Hypothetical Protein Tm1070; Chain: A › Protein of unknown function (DUF4621), C-terminal domain | 0.55 | 47.0 | 4.03e-01 | 97.3% | 88.8% |
| 3nngA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 47.0 | 3.79e-01 | 100.0% | 67.3% |
| 6b9tF01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.54 | 46.0 | 3.91e-01 | 100.0% | 57.6% |
| 4d0qA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 41.0 | 3.30e-01 | 85.3% | 51.6% |
| 1r75A00 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.53 | 43.0 | 3.82e-01 | 100.0% | 61.8% |
| 1xf1A03 | 2.60.40.1710 | Mainly Beta › Sandwich › Immunoglobulin-like › Subtilisin-like superfamily | 0.53 | 39.0 | 3.33e-01 | 81.3% | 80.2% |
| 2r0cA02 | 3.30.9.10 | Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 | 0.53 | 45.0 | 3.79e-01 | 100.0% | 85.5% |
| 6tfjA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 40.0 | 3.58e-01 | 85.3% | 65.2% |
| 1gqgC01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.52 | 42.0 | 3.48e-01 | 100.0% | 48.6% |
| 5oj2B05 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 33.0 | 3.06e-01 | 80.0% | 47.9% |
| 1stmA00 | 2.60.120.220 | Mainly Beta › Sandwich › Jelly Rolls › Satellite virus coat domain | 0.51 | 44.0 | 3.69e-01 | 100.0% | 80.1% |
| 1r77A00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.51 | 43.0 | 3.92e-01 | 92.0% | 89.9% |
| 4gioA00 | 2.60.40.3230 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 38.0 | 3.48e-01 | 82.7% | 61.5% |
| 4jg5A01 | 2.60.40.2580 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.51 | 38.0 | 3.04e-01 | 84.0% | 82.9% |
| 2q7nA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 36.0 | 3.55e-01 | 77.3% | 86.4% |
| 4il7A00 | 2.60.120.1300 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 43.0 | 4.17e-01 | 100.0% | 87.1% |
| 3gldA01 | 2.60.40.3050 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.50 | 36.0 | 3.02e-01 | 77.3% | 95.1% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4250299 | 304.8.1.5 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › NIL | 0.76 | 60.0 | 5.35e-01 | 84.0% | 78.1% |
| 2770666 | 834.1.1.1 ↗ | a+b two layers › Photosystem I subunit PsaD › Photosystem I subunit PsaD › Photosystem I subunit PsaD › PsaD | 0.72 | 54.0 | 4.37e-01 | 80.0% | 42.0% |
| 4599322 | 304.8.1.1 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › Thr_dehydrat_C | 0.72 | 55.0 | 5.15e-01 | 81.3% | 84.4% |
| 4878841 | 5077.1.1.2 ↗ | extended segments › Chlorophyll a-b binding protein › Chlorophyll a-b binding protein › Chlorophyll a-b binding protein › PsaD | 0.71 | 53.0 | 4.43e-01 | 80.0% | 45.5% |
| 3263682 | 11.1.5.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f | 0.71 | 47.0 | 4.63e-01 | 82.7% | 63.7% |
| 4022697 | 304.8.1.2 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT | 0.70 | 53.0 | 5.08e-01 | 80.0% | 95.3% |
| 4267491 | 304.147.1.1 ↗ | a+b two layers › Alpha-beta plaits › Tetrahydrodipicolinate acetyltransferase N-terminal domain › Tetrahydrodipicolinate acetyltransferase N-terminal domain › DapH_N | 0.70 | 53.0 | 4.93e-01 | 85.3% | 64.2% |
| 3627890 | 11.2.1.1 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain › C2 | 0.69 | 56.0 | 4.39e-01 | 89.3% | 94.4% |
| 5023638 | 821.1.1.4 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 | 0.67 | 51.0 | 4.03e-01 | 81.3% | 56.0% |
| 4618975 | 304.5.1.2 ↗ | a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like › DUF190 | 0.66 | 50.0 | 4.23e-01 | 81.3% | 75.2% |
| 4966081 | 821.1.1.4 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 | 0.65 | 50.0 | 3.88e-01 | 82.7% | 49.7% |
| 5082182 | 304.128.1.0 ↗ | a+b two layers › Alpha-beta plaits › ferredoxin-like domain in periplasmic region of MacB › ferredoxin-like domain in periplasmic region of MacB | 0.65 | 48.0 | 4.47e-01 | 78.7% | 96.8% |
| 4857234 | 834.1.1.1 ↗ | a+b two layers › Photosystem I subunit PsaD › Photosystem I subunit PsaD › Photosystem I subunit PsaD › PsaD | 0.65 | 54.0 | 4.20e-01 | 93.3% | 42.8% |
| 4329557 | 304.24.1.0 ↗ | a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like | 0.64 | 50.0 | 4.75e-01 | 86.7% | 86.7% |
| 4933005 | 4076.3.1.0 ↗ | a+b two layers › L9 N-domain-like › GINS/PriA/YqbF domain › GINS/PriA/YqbF domain | 0.63 | 47.0 | 5.12e-01 | 85.3% | 100.0% |
| 3255405 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.63 | 42.0 | 4.20e-01 | 82.7% | 65.0% |
| 2568674 | 834.1.1.1 ↗ | a+b two layers › Photosystem I subunit PsaD › Photosystem I subunit PsaD › Photosystem I subunit PsaD › PsaD | 0.63 | 53.0 | 4.89e-01 | 93.3% | 73.5% |
| 4996590 | 821.1.1.4 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 | 0.63 | 49.0 | 3.84e-01 | 82.7% | 52.3% |
| 5048531 | 821.1.1.4 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 | 0.62 | 47.0 | 3.76e-01 | 81.3% | 52.0% |
| 4933963 | 821.1.1.4 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 | 0.62 | 48.0 | 3.81e-01 | 82.7% | 52.0% |
| 5001137 | 821.1.1.4 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 | 0.62 | 47.0 | 3.80e-01 | 81.3% | 54.3% |
| 3243597 | 10.32.1.277 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF870 | 0.60 | 45.0 | 4.34e-01 | 81.3% | 96.5% |
| 3596070 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.58 | 45.0 | 3.64e-01 | 86.7% | 85.0% |
| 4947594 | 304.4.1.0 ↗ | a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel | 0.58 | 44.0 | 4.45e-01 | 82.7% | 82.7% |
| 185544 | 11.1.4.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like | 0.57 | 40.0 | 3.29e-01 | 73.3% | 91.1% |
| 3624262 | 101.1.2.115 ↗ | alpha arrays › HTH › HTH › winged helix domain › CDC27 | 0.57 | 40.0 | 3.20e-01 | 86.7% | 36.7% |
| 3296203 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.55 | 38.0 | 4.03e-01 | 80.0% | 84.6% |
| 3839919 | 5084.1.1.15 ↗ | beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › HP_OMP | 0.55 | 42.0 | 3.05e-01 | 84.0% | 93.6% |
| 3516879 | 10.2.1.5 ↗ | beta sandwiches › jelly-roll › Nucleoplasmin-like/VP (viral coat and capsid proteins) › Nucleoplasmin-like/VP (viral coat and capsid proteins) › TGFb_propeptide | 0.55 | 41.0 | 2.97e-01 | 81.3% | 43.9% |
| 5000210 | 11.1.1.14 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Glyco_hydro_2 | 0.54 | 39.0 | 3.48e-01 | 77.3% | 80.9% |
| 4961736 | 10.12.1.0 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix | 0.54 | 42.0 | 3.77e-01 | 100.0% | 58.3% |
| 3734524 | 11.14.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Ig-like domains in STT3 › Ig-like domains in STT3 | 0.54 | 39.0 | 3.57e-01 | 78.7% | 81.9% |
| 3232933 | 11.1.1.1234 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF870 | 0.53 | 39.0 | 3.48e-01 | 81.3% | 90.4% |
| 3414535 | 11.2.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › C2 domain › C2 domain | 0.53 | 37.0 | 2.95e-01 | 77.3% | 97.3% |
| 3273223 | 11.1.1.9 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Arrestin_N | 0.53 | 39.0 | 3.28e-01 | 81.3% | 85.5% |
| 3231885 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.53 | 39.0 | 3.41e-01 | 82.7% | 70.4% |
| 3612754 | 10.15.1.1 ↗ | beta sandwiches › jelly-roll › Smp-1-like › Smp-1-like › DUF1935 | 0.52 | 44.0 | 3.79e-01 | 93.3% | 75.0% |
| 4979124 | 821.1.1.4 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › DUF123 | 0.52 | 43.0 | 3.38e-01 | 89.3% | 78.1% |
| 3247277 | 5069.1.3.99 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › NRF | 0.52 | 46.0 | 3.58e-01 | 97.3% | 98.8% |
| 4949566 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 39.0 | 3.53e-01 | 81.3% | 81.7% |
| 3480053 | 10.1.1.0 ↗ | beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases | 0.50 | 43.0 | 3.19e-01 | 100.0% | 65.9% |
D2
high
residues 102-155
Domain cluster:
representative
CATH (1)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2p1oB01 | 1.20.1280.50 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.63 | 39.0 | 4.33e-01 | 77.8% | 86.8% |