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LSDeep1_scaffold_42_prodigal-single.1__X__X__00189
Bact-VirLSDeep1_scaffold_42_prodigal-single.1__X__X__00189
Identity
- Kingdom:
- phage
Quality
87.9
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 46-138
Domain cluster:
representative
CATH (16)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2dkmA00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.61 | 40.0 | 3.89e-01 | 86.0% | 58.7% |
| 8afoA01 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.60 | 39.0 | 4.02e-01 | 87.1% | 69.3% |
| 1y6kR02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.59 | 39.0 | 3.82e-01 | 87.1% | 61.2% |
| 2qsdA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.56 | 38.0 | 4.30e-01 | 86.0% | 97.0% |
| 2nmlA00 | 3.30.2260.10 | Alpha Beta › 2-Layer Sandwich › ERH-like fold › Enhancer of rudimentary | 0.56 | 47.0 | 4.63e-01 | 92.5% | 92.0% |
| 1wktA00 | 2.60.20.20 | Mainly Beta › Sandwich › Gamma-B Crystallin; domain 1 › | 0.55 | 34.0 | 3.57e-01 | 90.3% | 65.9% |
| 4nzdB02 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.55 | 41.0 | 3.89e-01 | 87.1% | 66.1% |
| 4kyzA00 | 3.30.70.600 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 | 0.54 | 48.0 | 4.01e-01 | 100.0% | 82.6% |
| 2mp4A00 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.53 | 45.0 | 3.80e-01 | 95.7% | 80.6% |
| 4kkdB04 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.53 | 47.0 | 4.25e-01 | 97.8% | 83.9% |
| 2mraA00 | 3.30.1710.10 | Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein | 0.53 | 42.0 | 3.93e-01 | 87.1% | 90.6% |
| 1xhnA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.53 | 45.0 | 3.80e-01 | 97.8% | 93.4% |
| 2o8rB02 | 3.30.1840.10 | Alpha Beta › 2-Layer Sandwich › polyphosphate kinase like › Polyphosphate kinase middle domain | 0.52 | 47.0 | 3.96e-01 | 100.0% | 70.3% |
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.52 | 39.0 | 3.74e-01 | 86.0% | 68.5% |
| 1x9tA02 | 3.90.1620.10 | Alpha Beta › Alpha-Beta Complex › adenovirus 2 penton base, domain 2 › adenovirus 2 penton base, domain 2 | 0.51 | 43.0 | 3.13e-01 | 94.6% | 93.6% |
| 1wgpA01 | 2.60.120.10 | Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls | 0.51 | 34.0 | 3.14e-01 | 96.8% | 52.1% |
ECOD (28)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3264069 | 822.1.1.2 ↗ | a+b two layers › GYF/BRK domain-like › GYF domain › GYF domain › GYF_2 | 0.69 | 44.0 | 5.28e-01 | 92.5% | 100.0% |
| 3990833 | 382.1.1.13 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Ly-6_related | 0.64 | 46.0 | 4.59e-01 | 74.2% | 96.8% |
| 4511150 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.63 | 32.0 | 3.80e-01 | 81.7% | 73.3% |
| 3738046 | 1.1.1.27 ↗ | beta barrels › cradle loop barrel › RIFT-related › acid protease › Asp, TAXi_N | 0.63 | 56.0 | 3.63e-01 | 98.9% | 28.7% |
| 3186023 | 304.53.1.1 ↗ | a+b two layers › Alpha-beta plaits › DOPA dioxygenase-like › DOPA dioxygenase-like › DOPA_dioxygen | 0.61 | 48.0 | 3.98e-01 | 87.1% | 68.9% |
| 4216863 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.60 | 51.0 | 5.30e-01 | 98.9% | 98.8% |
| 4932386 | 871.1.1.1 ↗ | a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 | 0.58 | 49.0 | 3.94e-01 | 95.7% | 63.6% |
| 4982909 | 871.1.1.1 ↗ | a+b two layers › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › SSo0622-like (Pfam 02676) › TYW3 | 0.58 | 51.0 | 4.11e-01 | 100.0% | 76.2% |
| None | — | 0.57 | 49.0 | 4.88e-01 | 93.5% | 95.8% | |
| 3994984 | 3115.1.1.0 ↗ | a+b two layers › GP2-like › RplX-like › RplX-like | 0.57 | 39.0 | 4.53e-01 | 98.9% | 100.0% |
| 3712786 | 3346.1.1.0 ↗ | a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 | 0.57 | 49.0 | 4.07e-01 | 98.9% | 60.0% |
| 3219619 | 382.1.1.13 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › Ly-6_related | 0.55 | 41.0 | 3.62e-01 | 77.4% | 68.1% |
| 5075171 | 10.4.1.0 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain | 0.55 | 37.0 | 3.73e-01 | 87.1% | 67.4% |
| 4945733 | 2006.1.3.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain | 0.55 | 43.0 | 3.23e-01 | 84.9% | 91.2% |
| 3929359 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.55 | 40.0 | 3.84e-01 | 77.4% | 91.7% |
| 3488512 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 42.0 | 3.96e-01 | 86.0% | 67.0% |
| 4026479 | 821.1.1.1 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG | 0.54 | 38.0 | 3.38e-01 | 71.0% | 66.9% |
| 3929391 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.54 | 40.0 | 3.78e-01 | 77.4% | 89.1% |
| 3935205 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.53 | 40.0 | 3.74e-01 | 100.0% | 62.5% |
| 3398694 | 4210.1.1.0 ↗ | a+b two layers › WGR domain › WGR domain › WGR domain | 0.53 | 41.0 | 4.01e-01 | 84.9% | 96.2% |
| 3708757 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.53 | 41.0 | 3.52e-01 | 97.8% | 53.1% |
| 5079276 | 1.1.2.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › double psi | 0.52 | 47.0 | 4.45e-01 | 97.8% | 93.6% |
| 4978692 | 1075.1.2.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › MacB transmembrane domain | 0.52 | 40.0 | 2.89e-01 | 84.9% | 28.2% |
| 3391783 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 41.0 | 3.38e-01 | 86.0% | 65.1% |
| 3621694 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.51 | 39.0 | 3.81e-01 | 84.9% | 73.3% |
| 3469970 | 3785.1.1.0 ↗ | a+b three layers › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain › Suppressor of Fused, C-terminal domain | 0.50 | 38.0 | 3.32e-01 | 81.7% | 82.8% |
| 3650990 | 274.1.1.44 ↗ | a+b two layers › Pili subunits › Pili subunits › Pili subunits › DUF7804 | 0.50 | 41.0 | 3.74e-01 | 91.4% | 66.9% |
| 3581212 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.50 | 39.0 | 3.56e-01 | 86.0% | 72.3% |