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LSDeep1_scaffold_42_prodigal-single.1__X__X__00239
Bact-VirLSDeep1_scaffold_42_prodigal-single.1__X__X__00239
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-54
Domain cluster:
representative
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3734818 | 109.4.1.147 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › EST1_DNA_bind | 0.53 | 37.0 | 2.16e-01 | 74.1% | 7.3% |
| 3875632 | 5054.1.1.63 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, YVC1_C | 0.51 | 35.0 | 2.17e-01 | 96.3% | 11.0% |
D2
high
residues 58-71_182-230
Domain cluster:
representative
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2q18X01 | 3.10.330.40 | Alpha Beta › Roll › Vcp-like ATPase; Chain A, domain 2 › | 0.60 | 43.0 | 4.15e-01 | 76.2% | 97.1% |
| 6bm0A01 | 2.130.10.10 | Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase | 0.59 | 41.0 | 2.58e-01 | 73.0% | 32.7% |
| 2dk7A00 | 2.20.70.10 | Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › | 0.55 | 39.0 | 3.80e-01 | 76.2% | 74.0% |
| 1fwxA02 | 2.60.40.420 | Mainly Beta › Sandwich › Immunoglobulin-like › Cupredoxins - blue copper proteins | 0.55 | 45.0 | 3.73e-01 | 93.7% | 70.2% |
| 4fl4F02 | 2.60.40.4130 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.54 | 43.0 | 3.26e-01 | 87.3% | 36.3% |
| 4by2B00 | 2.60.450.20 | Mainly Beta › Sandwich › lipopolysaccharide transport protein A fold › | 0.52 | 35.0 | 2.69e-01 | 71.4% | 92.3% |
| 7wffb01 | 2.70.98.10 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › | 0.51 | 35.0 | 2.31e-01 | 73.0% | 34.8% |
| 4pbpA00 | 2.60.120.200 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 41.0 | 2.96e-01 | 95.2% | 86.9% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3570978 | 4.2.1.3 ↗ | beta barrels › SH3 › SAND › SAND › RAMA | 0.67 | 55.0 | 4.91e-01 | 92.1% | 83.3% |
| 4026056 | 221.1.1.7 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › UBX | 0.64 | 54.0 | 4.46e-01 | 100.0% | 72.8% |
| 5070897 | 11.1.4.23 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg | 0.62 | 44.0 | 4.16e-01 | 87.3% | 62.7% |
| 1606334 | 4.10.1.0 ↗ | beta barrels › SH3 › Fumarylacetoacetate hydrolase, FAH, N-terminal domain › Fumarylacetoacetate hydrolase, FAH, N-terminal domain | 0.59 | 42.0 | 4.10e-01 | 76.2% | 94.4% |
| 4338996 | 375.1.1.60 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › PriA_CRR | 0.59 | 42.0 | 4.37e-01 | 76.2% | 95.0% |
| 3247746 | 5.1.4.303 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS2_N, BBS2_Mid | 0.56 | 41.0 | 2.67e-01 | 79.4% | 94.4% |
| 3939950 | 11.1.1.532 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 | 0.56 | 47.0 | 4.43e-01 | 100.0% | 93.8% |
| 5080052 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 47.0 | 4.19e-01 | 100.0% | 76.8% |
| 5048065 | 295.1.1.0 ↗ | a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain | 0.55 | 39.0 | 3.45e-01 | 77.8% | 66.0% |
| 3997447 | 5.1.4.303 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › BBS2_N, BBS2_Mid | 0.54 | 40.0 | 2.63e-01 | 81.0% | 96.6% |
| 5062101 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 43.0 | 3.76e-01 | 98.4% | 80.0% |
| 3517651 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.51 | 44.0 | 4.19e-01 | 100.0% | 92.0% |
| 3876103 | 593.1.1.1 ↗ | alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 | 0.50 | 36.0 | 2.32e-01 | 77.8% | 15.1% |
D3
high
residues 73-180
Domain cluster:
rep: LacPavin_0818_WC45_scaffold_160996_curated_closed_complete_prodigal-single.1__X__X__00785__D40-148
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1av4A03 | 2.70.98.20 | Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain | 0.58 | 43.0 | 2.91e-01 | 78.7% | 88.7% |
| 3fljA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.57 | 40.0 | 3.67e-01 | 83.3% | 54.6% |
| 2l33A00 | 3.30.160.20 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › | 0.54 | 33.0 | 3.61e-01 | 71.3% | 72.5% |
| 2qguA01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 35.0 | 3.62e-01 | 74.1% | 70.3% |
| 4orlA00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 38.0 | 3.80e-01 | 84.3% | 72.7% |
| 6xrbA01 | 3.40.1000.10 | Alpha Beta › 3-Layer(aba) Sandwich › Protein Transport Mog1p; Chain A › Mog1/PsbP, alpha/beta/alpha sandwich | 0.53 | 46.0 | 4.24e-01 | 94.4% | 76.3% |
| 2pmaA01 | 2.40.70.10 | Mainly Beta › Beta Barrel › Cathepsin D, subunit A; domain 1 › Acid Proteases | 0.53 | 35.0 | 3.38e-01 | 83.3% | 57.9% |
| 3dxoB00 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.53 | 38.0 | 3.71e-01 | 81.5% | 68.4% |
| 3hi2B00 | 3.30.2310.40 | Alpha Beta › 2-Layer Sandwich › YaeB-like fold › | 0.53 | 35.0 | 3.70e-01 | 89.8% | 75.3% |
| 2xswB00 | 3.60.10.10 | Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase | 0.53 | 39.0 | 2.89e-01 | 80.6% | 86.5% |
| 3en8A01 | 3.10.450.50 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.52 | 35.0 | 3.53e-01 | 85.2% | 67.0% |
| 3u1wA02 | 3.10.450.360 | Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › | 0.51 | 32.0 | 3.79e-01 | 89.8% | 100.0% |
| 2cduA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.51 | 35.0 | 3.54e-01 | 72.2% | 98.2% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3329783 | 330.1.1.1 ↗ | a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm | 0.60 | 39.0 | 4.15e-01 | 70.4% | 75.8% |
| 3837575 | 5.1.3.144 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like | 0.57 | 40.0 | 2.80e-01 | 74.1% | 32.1% |
| 3484575 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.56 | 43.0 | 4.21e-01 | 81.5% | 74.2% |
| 4003669 | 5.1.4.37 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 | 0.55 | 39.0 | 2.59e-01 | 74.1% | 16.7% |
| 4397441 | 3222.1.1.1 ↗ | a+b complex topology › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › Regulatory domain of isocitrate dehydrogenase kinase/phosphatase › AceK_regulatory | 0.55 | 39.0 | 2.87e-01 | 74.1% | 35.2% |
| 3606765 | 881.1.1.0 ↗ | a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like | 0.54 | 48.0 | 4.04e-01 | 100.0% | 85.8% |
| 5047469 | 331.10.2.0 ↗ | a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase | 0.54 | 40.0 | 3.77e-01 | 86.1% | 64.6% |
| 3439826 | 331.4.1.0 ↗ | a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 | 0.54 | 46.0 | 4.18e-01 | 95.4% | 72.0% |
| 1146735 | 243.1.1.29 ↗ | a+b two layers › Cystatin-like › NTF2-like › NTF2-like › DUF4783 | 0.53 | 38.0 | 3.80e-01 | 84.3% | 72.7% |
| 4955671 | 7089.1.1.0 ↗ | a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD | 0.53 | 34.0 | 3.82e-01 | 80.6% | 86.3% |
| 4031483 | 243.3.1.0 ↗ | a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin | 0.53 | 40.0 | 4.27e-01 | 80.6% | 100.0% |
| 4972327 | 4312.1.1.0 ↗ | a+b two layers › RelE-like › RelE-like › RelE-like | 0.52 | 36.0 | 3.81e-01 | 89.8% | 81.1% |
| 151649 | 5.1.4.11 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Clathrin_propel | 0.52 | 36.0 | 2.59e-01 | 72.2% | 38.4% |
| 4996571 | 223.1.1.27 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 | 0.51 | 40.0 | 3.75e-01 | 84.3% | 77.8% |
| 3706741 | 5.1.3.28 ↗ | beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › BNR_3 | 0.51 | 36.0 | 2.81e-01 | 74.1% | 39.6% |