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LSDeep1_scaffold_42_prodigal-single.1__X__X__00252
Bact-VirLSDeep1_scaffold_42_prodigal-single.1__X__X__00252
Identity
- Kingdom:
- phage
Quality
75.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 28-185
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2yfaB01 | 1.20.1440.210 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › | 0.70 | 50.0 | 5.66e-01 | 83.5% | 96.6% |
| 1i5nB00 | 1.20.120.160 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain | 0.69 | 44.0 | 4.89e-01 | 84.2% | 81.5% |
| 2jx0A00 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.68 | 49.0 | 5.35e-01 | 82.3% | 89.3% |
| 4iggB06 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.67 | 54.0 | 4.86e-01 | 84.8% | 83.3% |
| 1qkrB00 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.66 | 56.0 | 5.34e-01 | 88.6% | 97.2% |
| 1zvzA02 | 1.20.120.230 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like | 0.64 | 48.0 | 5.32e-01 | 85.4% | 98.4% |
| 3dyjA02 | 1.20.1420.10 | Mainly Alpha › Up-down Bundle › A middle domain of Talin 1 › Talin, central domain | 0.63 | 46.0 | 4.71e-01 | 82.3% | 77.5% |
| 1txdA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.60 | 43.0 | 3.77e-01 | 71.5% | 87.0% |
| 7xk2R01 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.60 | 43.0 | 3.58e-01 | 72.8% | 98.1% |
| 1st6A01 | 1.20.120.810 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Vinculin, Vh2 four-helix bundle | 0.59 | 50.0 | 4.20e-01 | 88.6% | 98.0% |
| 1q0gA00 | 1.20.120.400 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nickel-containing superoxide dismutase | 0.58 | 42.0 | 4.72e-01 | 76.6% | 100.0% |
| 2qzcA00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.56 | 39.0 | 3.60e-01 | 71.5% | 82.8% |
| 1jfaB00 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.55 | 48.0 | 3.79e-01 | 96.8% | 70.0% |
| 8h6qD01 | 1.10.600.10 | Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase | 0.54 | 49.0 | 3.97e-01 | 99.4% | 83.7% |
| 1ki1B01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.54 | 37.0 | 3.51e-01 | 70.3% | 97.5% |
| 4ys0A02 | 1.10.3060.10 | Mainly Alpha › Orthogonal Bundle › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA | 0.52 | 29.0 | 2.86e-01 | 71.5% | 47.1% |
| 2rfqC03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.52 | 41.0 | 4.02e-01 | 82.9% | 99.4% |
| 2or0A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.52 | 41.0 | 3.95e-01 | 84.2% | 100.0% |
| 4rngC00 | 1.20.1280.290 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.51 | 26.0 | 3.46e-01 | 72.2% | 91.6% |
| 6ko5A02 | 1.20.1070.10 | Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins | 0.51 | 43.0 | 3.55e-01 | 91.8% | 94.9% |
| 3s84A02 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.50 | 35.0 | 3.53e-01 | 70.3% | 87.3% |
ECOD (24)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3554799 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.78 | 54.0 | 6.04e-01 | 70.9% | 98.4% |
| 3938121 | 601.1.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin | 0.75 | 54.0 | 4.87e-01 | 74.7% | 67.4% |
| 4942916 | 601.12.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › Nickel-containing superoxide dismutase, NiSOD › Nickel-containing superoxide dismutase, NiSOD › Sod_Ni | 0.74 | 55.0 | 5.59e-01 | 75.9% | 95.5% |
| 3586824 | 601.1.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin | 0.73 | 53.0 | 3.82e-01 | 74.1% | 33.6% |
| 3498285 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.73 | 53.0 | 5.68e-01 | 84.8% | 84.3% |
| 3633107 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.66 | 38.0 | 4.72e-01 | 83.5% | 93.7% |
| 3253931 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.65 | 55.0 | 5.61e-01 | 93.7% | 91.0% |
| 5082140 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.65 | 46.0 | 5.31e-01 | 81.6% | 98.3% |
| 54393 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.65 | 49.0 | 5.48e-01 | 85.4% | 98.4% |
| 4950702 | 192.29.1.0 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) | 0.64 | 46.0 | 5.09e-01 | 77.8% | 92.8% |
| 3881489 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.62 | 52.0 | 4.11e-01 | 88.6% | 77.1% |
| 3255555 | 601.1.1.1 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › Vinculin | 0.62 | 57.0 | 5.39e-01 | 98.7% | 82.6% |
| 3970386 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.61 | 48.0 | 5.12e-01 | 82.3% | 94.8% |
| 3967683 | 601.4.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains | 0.61 | 47.0 | 4.85e-01 | 80.4% | 85.3% |
| 3443525 | 611.7.1.1 ↗ | alpha bundles › N-cbl like › Mixed lineage kinase domain-like (MLKL) N-terminal domain › Mixed lineage kinase domain-like (MLKL) N-terminal domain › MLKL_N | 0.60 | 39.0 | 4.23e-01 | 70.9% | 79.2% |
| 3819361 | 611.8.1.0 ↗ | alpha bundles › N-cbl like › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 › C-terminal domain of E3 ubiquitin-protein ligase ARIH1 | 0.59 | 41.0 | 4.21e-01 | 70.3% | 78.0% |
| 4645964 | 141.1.1.8 ↗ | alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_syn_C_2 | 0.58 | 51.0 | 3.94e-01 | 94.3% | 81.4% |
| 3723563 | 3567.1.1.0 ↗ | a+b duplicates or obligate multimers › MPER trimer › MPER trimer › MPER trimer | 0.57 | 46.0 | 4.23e-01 | 86.7% | 83.3% |
| 5052913 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.56 | 43.0 | 4.28e-01 | 81.0% | 87.3% |
| 4014222 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.55 | 50.0 | 4.75e-01 | 96.2% | 93.9% |
| 4501118 | 109.3.1.267 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › PF30158 | 0.54 | 40.0 | 3.49e-01 | 74.7% | 81.2% |
| 3473043 | 633.6.1.6 ↗ | alpha bundles › Bromodomain-like › Acyl-CoA dehydrogenase C-terminal domain-like › Acyl-CoA dehydrogenase C-terminal domain-like › ACAD9-ACADV_C | 0.53 | 39.0 | 4.14e-01 | 87.3% | 88.1% |
| 3312398 | 633.4.1.1 ↗ | alpha bundles › Bromodomain-like › Plant invertase/pectin methylesterase inhibitor › Plant invertase/pectin methylesterase inhibitor › PMEI | 0.50 | 41.0 | 4.05e-01 | 84.8% | 84.8% |
| 3194213 | 5001.1.1.8 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › HlyIII | 0.50 | 44.0 | 3.64e-01 | 97.5% | 77.6% |
D2
medium
residues 188-283
D3
medium
residues 677-741
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1is8A01 | 1.10.286.10 | Mainly Alpha › Orthogonal Bundle › GTP Cyclohydrolase I; Chain A, domain 1 › GTP cyclohydrolase I, N-terminal domain | 0.67 | 41.0 | 4.22e-01 | 72.3% | 65.0% |
| 1v1gA00 | 1.10.238.10 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand | 0.61 | 51.0 | 3.78e-01 | 98.5% | 35.1% |
| 1go4A00 | 3.30.900.10 | Alpha Beta › 2-Layer Sandwich › Cell Cycle, Spindle Assembly Checkpoint Protein; Chain A › HORMA domain | 0.59 | 51.0 | 3.69e-01 | 100.0% | 82.7% |
| 1tbxB00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.56 | 44.0 | 4.10e-01 | 92.3% | 70.0% |
| 4e6hA00 | 1.25.40.1040 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.56 | 38.0 | 2.26e-01 | 80.0% | 8.5% |
| 1gkuB06 | 1.10.460.10 | Mainly Alpha › Orthogonal Bundle › Topoisomerase I; domain 2 › Topoisomerase I, domain 2 | 0.55 | 45.0 | 3.52e-01 | 95.4% | 48.7% |
| 3lfuA02 | 1.10.10.160 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.55 | 46.0 | 4.58e-01 | 100.0% | 91.4% |
| 5lewA03 | 1.10.10.1600 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Bacterial DNA polymerase III alpha subunit, thumb domain | 0.54 | 45.0 | 4.44e-01 | 100.0% | 95.9% |
| 1bjaA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.53 | 38.0 | 3.44e-01 | 84.6% | 53.7% |
| 5izdA02 | 3.40.309.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 2 › Aldehyde Dehydrogenase; Chain A, domain 2 | 0.53 | 43.0 | 3.20e-01 | 96.9% | 73.1% |
| 6opmD01 | 1.20.120.920 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain | 0.52 | 42.0 | 2.92e-01 | 92.3% | 44.1% |
| 1zpwX00 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.52 | 38.0 | 3.61e-01 | 100.0% | 64.6% |
| 6k2eA01 | 3.30.70.240 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 38.0 | 3.82e-01 | 100.0% | 77.9% |
| 3jamS01 | 1.10.8.50 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.51 | 34.0 | 3.27e-01 | 87.7% | 56.8% |
| 2f1rA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.51 | 41.0 | 3.22e-01 | 90.8% | 84.5% |
| 4mz0B05 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.51 | 37.0 | 3.75e-01 | 96.9% | 77.6% |
| 3ucsA00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.51 | 38.0 | 3.41e-01 | 90.8% | 55.6% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4937564 | 3696.1.1.0 ↗ | a+b two layers › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related › DNA helicase UvsW N-terminal a+b domain-related | 0.62 | 41.0 | 3.96e-01 | 96.9% | 60.0% |
| 3796903 | 101.1.15.0 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain | 0.59 | 40.0 | 3.70e-01 | 81.5% | 54.1% |
| 3806665 | 109.4.1.1495 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26522 | 0.57 | 45.0 | 2.85e-01 | 87.7% | 38.6% |
| 3743676 | 2498.1.1.113 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › FKS1_dom1 | 0.56 | 46.0 | 3.03e-01 | 92.3% | 33.2% |
| 3990729 | 101.1.15.1 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS | 0.56 | 37.0 | 3.43e-01 | 86.2% | 51.1% |
| 5025092 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.55 | 39.0 | 3.80e-01 | 100.0% | 66.7% |
| 4018916 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.55 | 49.0 | 2.92e-01 | 100.0% | 61.4% |
| 3232177 | 109.4.1.1297 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TIMELESS, PF27570 | 0.55 | 43.0 | 2.55e-01 | 87.7% | 21.8% |
| 4950772 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.55 | 45.0 | 4.03e-01 | 98.5% | 70.0% |
| 3576188 | 101.1.15.1 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS | 0.54 | 37.0 | 3.36e-01 | 86.2% | 51.1% |
| 3626670 | 101.1.15.1 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS | 0.54 | 36.0 | 3.37e-01 | 81.5% | 51.1% |
| 4993453 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.54 | 35.0 | 3.81e-01 | 86.2% | 78.2% |
| 4503571 | 223.1.1.83 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_13 | 0.54 | 40.0 | 2.83e-01 | 84.6% | 31.8% |
| 4948782 | 101.1.2.136 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_20 | 0.54 | 38.0 | 3.67e-01 | 89.2% | 66.7% |
| 5022395 | 101.1.2.19 ↗ | alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac | 0.54 | 44.0 | 3.37e-01 | 95.4% | 49.1% |
| 5078551 | 242.1.1.0 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases | 0.53 | 39.0 | 4.08e-01 | 87.7% | 85.0% |
| 5050026 | 109.2.1.35 ↗ | alpha superhelices › Repetitive alpha hairpins › alpha/alpha toroid › alpha/alpha toroid › Hepar_II_III_N | 0.53 | 40.0 | 2.53e-01 | 83.1% | 37.7% |
| 3819120 | 101.1.2.120 ↗ | alpha arrays › HTH › HTH › winged helix domain › DDRGK | 0.53 | 34.0 | 3.00e-01 | 72.3% | 41.0% |
| 3286117 | 101.1.9.82 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › MerR-DNA-bind, MerR_1 | 0.53 | 39.0 | 3.24e-01 | 92.3% | 42.4% |
| 3224878 | 101.1.15.1 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS | 0.53 | 36.0 | 3.38e-01 | 84.6% | 54.4% |
| 3707588 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.52 | 44.0 | 3.56e-01 | 95.4% | 60.5% |
| 2760149 | 101.1.15.1 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS | 0.52 | 36.0 | 3.30e-01 | 84.6% | 52.2% |
| 4968901 | 304.22.1.0 ↗ | a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain | 0.52 | 38.0 | 3.87e-01 | 96.9% | 83.1% |
| 3843065 | 130.1.1.13 ↗ | alpha arrays › LEM/SAP HeH motif-like › LEM/SAP HeH motif › LEM/SAP HeH motif › Fan1_SAP | 0.51 | 43.0 | 4.14e-01 | 95.4% | 86.7% |
| 3491271 | 101.1.15.1 ↗ | alpha arrays › HTH › HTH › HAT1, C-terminal domain › MOZ_SAS | 0.51 | 36.0 | 3.41e-01 | 86.2% | 58.8% |
| 5022523 | 101.1.2.135 ↗ | alpha arrays › HTH › HTH › winged helix domain › MarR_2 | 0.51 | 39.0 | 3.60e-01 | 90.8% | 61.1% |
| 4117084 | 101.1.9.0 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain | 0.51 | 33.0 | 2.91e-01 | 90.8% | 43.0% |
| 3533128 | 101.1.2.506 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_NWD1 | 0.50 | 40.0 | 3.56e-01 | 96.9% | 71.8% |
| 3697051 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.50 | 41.0 | 3.07e-01 | 95.4% | 43.9% |