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LSDeep1_scaffold_42_prodigal-single.1__X__X__00257
Bact-VirLSDeep1_scaffold_42_prodigal-single.1__X__X__00257
Identity
- Kingdom:
- phage
Quality
89.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 7-105
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5dh0A02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.62 | 45.0 | 4.00e-01 | 77.8% | 66.0% |
| 2iw2A01 | 3.40.350.10 | Alpha Beta › 3-Layer(aba) Sandwich › Creatine Amidinohydrolase; Chain A, domain 1 › Creatinase/prolidase N-terminal domain | 0.58 | 42.0 | 3.47e-01 | 75.8% | 72.2% |
| 1efdN02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.58 | 42.0 | 3.57e-01 | 76.8% | 50.3% |
| 3hrgA02 | 3.30.420.260 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Protein of unknown function DUF3822, C-terminal domain | 0.58 | 42.0 | 4.02e-01 | 75.8% | 66.7% |
| 3tefA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.57 | 39.0 | 3.92e-01 | 71.7% | 83.7% |
| 3g9qA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.56 | 41.0 | 3.56e-01 | 77.8% | 61.7% |
| 1vq8N00 | 3.30.420.100 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.55 | 39.0 | 3.26e-01 | 75.8% | 61.3% |
| 3nzeA00 | 3.40.50.1360 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.54 | 43.0 | 3.30e-01 | 88.9% | 73.4% |
| 4mdyA02 | 3.40.50.1980 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nitrogenase molybdenum iron protein domain | 0.53 | 39.0 | 3.46e-01 | 77.8% | 59.1% |
| 7lnpA01 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.52 | 44.0 | 3.01e-01 | 92.9% | 94.3% |
| 3gz5B02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.52 | 26.0 | 2.99e-01 | 89.9% | 62.2% |
| 6w9rB01 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.52 | 44.0 | 3.82e-01 | 97.0% | 88.7% |
| 4wxjA02 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.50 | 41.0 | 4.02e-01 | 100.0% | 83.3% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4392478 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.59 | 37.0 | 3.77e-01 | 71.7% | 63.0% |
| 439020 | 2484.1.1.75 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L5e | 0.58 | 42.0 | 4.03e-01 | 75.8% | 77.0% |
| 4932409 | 2484.1.1.75 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L5e | 0.58 | 41.0 | 3.78e-01 | 75.8% | 60.7% |
| 4599967 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 41.0 | 3.94e-01 | 76.8% | 79.1% |
| 5024696 | 2484.1.1.75 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L5e | 0.56 | 40.0 | 3.52e-01 | 75.8% | 60.1% |
| 5047929 | 2484.1.1.75 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Ribosomal_L5e | 0.55 | 40.0 | 3.11e-01 | 76.8% | 49.6% |
| 3601736 | 2006.1.1.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like | 0.54 | 48.0 | 3.56e-01 | 99.0% | 80.4% |
| 4953767 | 2007.1.14.9 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like › DUF2112 | 0.54 | 42.0 | 3.63e-01 | 85.9% | 93.3% |
| 5064691 | 2004.1.1.120 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ResIII | 0.53 | 44.0 | 3.27e-01 | 90.9% | 81.9% |
| 3589306 | 2498.1.1.0 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" | 0.52 | 39.0 | 3.09e-01 | 79.8% | 95.2% |
| None | — | 0.51 | 37.0 | 3.39e-01 | 75.8% | 58.5% |