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LSDeep1_scaffold_42_prodigal-single.1__X__X__00276
Bact-VirLSDeep1_scaffold_42_prodigal-single.1__X__X__00276
Identity
- Kingdom:
- phage
Quality
92.5
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 8-77
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 7qh7701 | 3.30.980.10 | Alpha Beta › 2-Layer Sandwich › Threonyl-tRNA Synthetase; Chain A, domain 2 › Threonyl-trna Synthetase; Chain A, domain 2 | 0.61 | 51.0 | 3.75e-01 | 94.3% | 71.3% |
| 1dl5A01 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.60 | 39.0 | 2.78e-01 | 88.6% | 22.9% |
| 2fy6A00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.60 | 52.0 | 4.14e-01 | 98.6% | 85.3% |
| 1wibA00 | 3.30.1550.10 | Alpha Beta › 2-Layer Sandwich › Ribosomal protein L11, N-terminal domain › Ribosomal protein L11/L12, N-terminal domain | 0.59 | 42.0 | 3.92e-01 | 77.1% | 76.1% |
| 1yaxB00 | 3.30.450.140 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PhoQ sensor domain | 0.59 | 49.0 | 4.11e-01 | 100.0% | 97.0% |
| 1aduB02 | 3.90.148.10 | Alpha Beta › Alpha-Beta Complex › Adenovirus Single-stranded DNA-binding Protein; domain 2 › Adenovirus DNA-binding, C-terminal domain superfamily/Adenovirus DNA-binding, zinc binding domain | 0.58 | 39.0 | 3.19e-01 | 71.4% | 100.0% |
| 1noxA00 | 3.40.109.10 | Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase | 0.56 | 39.0 | 2.92e-01 | 74.3% | 66.5% |
| 4o7oA02 | 3.90.1200.10 | Alpha Beta › Alpha-Beta Complex › Aminoglycoside 3'-phosphotransferase; Chain: A, domain 2 › Aminoglycoside phosphotransferase (APH), C-terminal lobe | 0.54 | 38.0 | 2.65e-01 | 74.3% | 83.7% |
| 4grfA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 45.0 | 3.72e-01 | 100.0% | 84.3% |
| 2dc1A02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.53 | 41.0 | 3.71e-01 | 100.0% | 60.4% |
| 7aj0A01 | 3.40.720.10 | Alpha Beta › 3-Layer(aba) Sandwich › Alkaline Phosphatase, subunit A › Alkaline Phosphatase, subunit A | 0.53 | 36.0 | 2.33e-01 | 72.9% | 76.4% |
| 2ljaA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.52 | 44.0 | 3.56e-01 | 100.0% | 77.6% |
| 2l0cA00 | 2.40.50.660 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › | 0.52 | 36.0 | 3.37e-01 | 75.7% | 86.6% |
| 2p6cA00 | 2.60.120.460 | Mainly Beta › Sandwich › Jelly Rolls › YjbQ-like | 0.51 | 38.0 | 3.13e-01 | 81.4% | 81.0% |
| 4hqsA00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.51 | 42.0 | 3.57e-01 | 100.0% | 88.1% |
| 1j5pA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.51 | 41.0 | 3.76e-01 | 100.0% | 65.0% |
| 5m3nA03 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.50 | 35.0 | 3.21e-01 | 74.3% | 61.9% |
ECOD (15)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3593795 | 3781.1.1.0 ↗ | a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › Ribosomal protein L11/L12e N-terminal domain › Ribosomal protein L11/L12e N-terminal domain | 0.61 | 43.0 | 4.25e-01 | 74.3% | 88.0% |
| 4022780 | 243.18.1.0 ↗ | a+b two layers › Cystatin-like › Maltokinase N-terminal domain › Maltokinase N-terminal domain | 0.60 | 50.0 | 4.41e-01 | 92.9% | 72.8% |
| 4022156 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.59 | 49.0 | 2.88e-01 | 92.9% | 11.4% |
| 3399126 | 2485.1.1.0 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like | 0.58 | 47.0 | 3.85e-01 | 94.3% | 72.4% |
| 4316388 | 309.1.2.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain | 0.57 | 48.0 | 3.89e-01 | 100.0% | 99.3% |
| 3942921 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.56 | 44.0 | 3.22e-01 | 88.6% | 50.2% |
| 4178103 | 309.1.2.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain | 0.54 | 45.0 | 3.63e-01 | 100.0% | 95.0% |
| 4586436 | 223.1.1.7 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains › Autoind_bind | 0.53 | 42.0 | 3.24e-01 | 100.0% | 35.6% |
| 4474222 | 101.1.2.765 ↗ | alpha arrays › HTH › HTH › winged helix domain › TrfA | 0.53 | 42.0 | 2.88e-01 | 88.6% | 38.1% |
| 4192947 | 101.1.2.16 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_N | 0.52 | 42.0 | 3.23e-01 | 88.6% | 58.8% |
| 4432169 | 309.1.2.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain | 0.52 | 42.0 | 3.41e-01 | 100.0% | 90.3% |
| 4399060 | 309.1.2.0 ↗ | a+b two layers › LuxS, MPP, ThrRS/AlaRS common domain › LuxS, MPP, ThrRS/AlaRS common domain › ThrRS/AlaRS editing domain | 0.51 | 42.0 | 3.40e-01 | 100.0% | 89.7% |
| 5016449 | 259.2.1.0 ↗ | a+b two layers › Ribosomal protein L31e-like › Reductive activator for corrinoid/iron-sulfur protein second domain › Reductive activator for corrinoid/iron-sulfur protein second domain | 0.51 | 36.0 | 3.65e-01 | 77.1% | 95.7% |
| 2482289 | 101.1.2.16 ↗ | alpha arrays › HTH › HTH › winged helix domain › Rep3_N | 0.51 | 40.0 | 3.40e-01 | 91.4% | 77.5% |
| 3838585 | 2485.1.1.1 ↗ | a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin | 0.51 | 42.0 | 3.73e-01 | 94.3% | 80.8% |