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LSDeep1_scaffold_42_prodigal-single.1__X__X__00281
Bact-VirLSDeep1_scaffold_42_prodigal-single.1__X__X__00281
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 12-142
Domain cluster:
rep: MZ326860.1__QYW02172.1__CPT_Sonora_071__00069__D16-113
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.68 | 38.0 | 5.12e-01 | 80.9% | 100.0% |
| 3layF00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.62 | 30.0 | 3.91e-01 | 97.7% | 79.5% |
| 2z0qA01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.60 | 50.0 | 4.40e-01 | 89.3% | 95.9% |
| 1werA02 | 1.10.506.10 | Mainly Alpha › Orthogonal Bundle › GTPase Activation - p120GAP; domain 1 › GTPase Activation - p120gap; domain 1 | 0.59 | 51.0 | 4.92e-01 | 93.1% | 100.0% |
| 4gouA03 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.58 | 44.0 | 3.86e-01 | 80.2% | 94.9% |
| 3eabE00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.57 | 35.0 | 4.29e-01 | 80.2% | 94.2% |
| 4uyeA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.56 | 41.0 | 4.43e-01 | 92.4% | 89.9% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.56 | 38.0 | 4.51e-01 | 88.5% | 97.8% |
| 3k2jA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.56 | 43.0 | 4.46e-01 | 93.9% | 86.8% |
| 4n4gA01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.55 | 38.0 | 4.10e-01 | 95.4% | 82.9% |
| 2vixA03 | 1.20.1280.240 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.55 | 42.0 | 4.55e-01 | 84.0% | 92.9% |
| 2co9A00 | 1.10.30.10 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › High mobility group box domain | 0.55 | 33.0 | 3.70e-01 | 98.5% | 76.5% |
| 4dyqA01 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.55 | 31.0 | 3.47e-01 | 92.4% | 69.9% |
| 5tqbB01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.54 | 37.0 | 2.72e-01 | 87.8% | 26.8% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.54 | 31.0 | 3.53e-01 | 85.5% | 73.7% |
| 2vzbB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 45.0 | 4.13e-01 | 99.2% | 68.9% |
| 1blwC00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.54 | 39.0 | 3.86e-01 | 95.4% | 70.2% |
| 2yjkC00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 40.0 | 3.80e-01 | 95.4% | 66.2% |
| 4a25B01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 40.0 | 3.75e-01 | 93.1% | 64.6% |
| 3iu5A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.52 | 40.0 | 4.29e-01 | 93.1% | 93.0% |
| 1dpsA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 39.0 | 3.68e-01 | 92.4% | 64.2% |
| 2vxxA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 42.0 | 3.83e-01 | 96.9% | 64.5% |
| 1x8zB00 | 1.20.140.40 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein | 0.52 | 43.0 | 4.18e-01 | 94.7% | 78.2% |
| 4cybD00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 42.0 | 3.80e-01 | 96.9% | 64.3% |
| 2ig3A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.52 | 42.0 | 4.31e-01 | 88.5% | 92.1% |
| 4nt1A00 | 1.10.3520.10 | Mainly Alpha › Orthogonal Bundle › Glycolipid transfer protein, GLTP › Glycolipid transfer protein | 0.52 | 41.0 | 3.60e-01 | 85.5% | 88.0% |
| 1tjoB00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 42.0 | 3.76e-01 | 96.9% | 63.4% |
| 1eqfA02 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.51 | 39.0 | 4.06e-01 | 96.2% | 85.6% |
| 4gx0A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.51 | 35.0 | 3.90e-01 | 98.5% | 88.3% |
| 2fji102 | 1.10.357.70 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Exocyst complex component Sec6, C-terminal domain | 0.51 | 39.0 | 3.47e-01 | 80.9% | 67.4% |
| 4jgwA01 | 1.20.870.10 | Mainly Alpha › Up-down Bundle › Son of sevenless (SoS) protein; Chain S, domain 1 › Son of sevenless (SoS) protein Chain: S domain 1 | 0.51 | 36.0 | 3.38e-01 | 71.0% | 72.4% |
| 3hmfA00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.51 | 38.0 | 4.07e-01 | 93.1% | 89.7% |
| 4uurA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.51 | 40.0 | 4.12e-01 | 85.5% | 92.7% |
| 5yjlB01 | 3.30.460.30 | Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Glutamyl-tRNA reductase, N-terminal domain | 0.51 | 43.0 | 4.00e-01 | 90.8% | 97.5% |
| 2pqrA01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.50 | 32.0 | 3.71e-01 | 87.8% | 88.2% |
| 3ajmB02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.50 | 37.0 | 3.69e-01 | 96.2% | 73.7% |
| 5n17A01 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.50 | 36.0 | 4.01e-01 | 88.5% | 95.2% |
| 3fseB02 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.50 | 43.0 | 4.18e-01 | 90.1% | 95.8% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3319356 | 650.1.1.5 ↗ | alpha bundles › Chaperone J-domain › Chaperone J-domain › Chaperone J-domain › CPP1-like | 0.68 | 33.0 | 4.54e-01 | 91.6% | 93.8% |
| 3375600 | 604.3.1.1 ↗ | alpha bundles › Spectrin repeat-like › BAG domain › BAG domain › BAG | 0.62 | 38.0 | 4.54e-01 | 90.8% | 88.9% |
| 3977220 | 4121.1.1.1 ↗ | a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA | 0.60 | 53.0 | 4.14e-01 | 92.4% | 85.4% |
| 3277087 | 192.4.1.0 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) | 0.58 | 37.0 | 4.33e-01 | 83.2% | 89.5% |
| 3502622 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.56 | 42.0 | 4.33e-01 | 96.2% | 82.4% |
| 3258252 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.56 | 42.0 | 4.42e-01 | 97.7% | 89.6% |
| 4981470 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.55 | 45.0 | 4.14e-01 | 98.5% | 67.3% |
| 3466334 | 174.1.1.0 ↗ | few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain | 0.55 | 45.0 | 4.56e-01 | 95.4% | 86.2% |
| 3687279 | 109.4.1.150 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Ufd2P_core | 0.55 | 41.0 | 2.50e-01 | 77.9% | 30.1% |
| 3628708 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.54 | 46.0 | 4.38e-01 | 98.5% | 78.0% |
| 4958255 | 3636.1.1.0 ↗ | a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain | 0.54 | 45.0 | 4.14e-01 | 87.0% | 80.0% |
| 3252293 | 109.3.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 | 0.54 | 36.0 | 2.68e-01 | 80.9% | 27.7% |
| 4025746 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.54 | 48.0 | 4.42e-01 | 96.9% | 87.1% |
| 137165 | 150.1.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin | 0.54 | 45.0 | 4.13e-01 | 100.0% | 69.0% |
| 4030302 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.53 | 48.0 | 4.79e-01 | 96.9% | 97.0% |
| 3601072 | 7015.1.1.0 ↗ | alpha bundles › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain › Palmitoyltransferase DHHC transmembrane domain | 0.53 | 45.0 | 4.47e-01 | 100.0% | 85.0% |
| 3542709 | 3861.1.1.1 ↗ | alpha bundles › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › Mitochondrial translocator protein (TSPO) › TspO_MBR | 0.53 | 45.0 | 4.17e-01 | 96.9% | 72.1% |
| 3511929 | 633.1.1.1 ↗ | alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain | 0.52 | 42.0 | 4.35e-01 | 96.9% | 91.2% |
| 3476880 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.52 | 44.0 | 3.81e-01 | 90.1% | 93.5% |
| 3948577 | 150.1.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin | 0.52 | 38.0 | 3.53e-01 | 90.8% | 60.6% |
| 1298224 | 150.1.1.1 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Ferritin | 0.52 | 42.0 | 3.77e-01 | 96.9% | 63.6% |
| 4647835 | 4106.1.1.1 ↗ | few secondary structure elements › Zinc hairpin stack › Zinc hairpin stack › Zinc hairpin stack › DHHC | 0.51 | 44.0 | 3.68e-01 | 93.9% | 94.8% |
| 4107263 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.51 | 43.0 | 4.15e-01 | 92.4% | 90.0% |