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LSDeep1_scaffold_42_prodigal-single.1__X__X__00325

Bact-Vir

LSDeep1_scaffold_42_prodigal-single.1__X__X__00325

Identity

Kingdom:
phage

Quality

78.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-100
PDB
Domain cluster: representative
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tpmA00 2.10.70.10 Mainly Beta › Ribbon › Complement Module; domain 1 › Complement Module, domain 1 0.68 37.0 4.52e-01 77.1% 88.0%
3zleA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.63 29.0 3.90e-01 77.1% 89.7%
2y8tA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.61 33.0 3.91e-01 90.4% 78.2%
3kzwA01 3.40.220.10 Alpha Beta › 3-Layer(aba) Sandwich › Leucine Aminopeptidase, subunit E; domain 1 › Leucine Aminopeptidase, subunit E, domain 1 0.57 40.0 3.25e-01 73.5% 58.2%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3753991 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.70 37.0 4.74e-01 75.9% 95.6%
4992787 268.1.1.0 a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related 0.66 38.0 3.40e-01 84.3% 40.3%
4944155 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 42.0 3.51e-01 83.1% 61.9%
3286009 217.2.1.1 a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.55 39.0 3.75e-01 74.7% 86.3%
3288884 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.72e-01 86.7% 75.2%
4000387 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 34.0 3.22e-01 100.0% 56.2%