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LSDeep1_scaffold_42_prodigal-single.1__X__X__00396
Bact-VirLSDeep1_scaffold_42_prodigal-single.1__X__X__00396
Identity
- Kingdom:
- phage
Quality
90.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 18-173
Domain cluster:
representative
CATH (25)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2l48A00 | 3.30.70.2030 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.68 | 30.0 | 4.10e-01 | 86.5% | 78.8% |
| 3mahA01 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.67 | 32.0 | 4.53e-01 | 96.2% | 100.0% |
| 1jqgA01 | 3.30.70.340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Metallocarboxypeptidase-like | 0.66 | 31.0 | 4.01e-01 | 85.3% | 76.9% |
| 1kafA00 | 3.90.1150.20 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription regulator MotA, C-terminal domain | 0.66 | 40.0 | 4.65e-01 | 78.8% | 85.2% |
| 7npaA02 | 3.30.70.3340 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.65 | 33.0 | 4.28e-01 | 74.4% | 87.1% |
| 4qbuA03 | 3.30.70.250 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Malonyl-CoA ACP transacylase, ACP-binding | 0.64 | 29.0 | 4.35e-01 | 83.3% | 100.0% |
| 3madA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.63 | 37.0 | 3.99e-01 | 70.5% | 67.9% |
| 4i0wA00 | 3.30.70.2980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.62 | 32.0 | 4.09e-01 | 80.1% | 84.8% |
| 4q6rA02 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.61 | 36.0 | 3.91e-01 | 70.5% | 68.7% |
| 2diuA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.60 | 29.0 | 4.17e-01 | 82.1% | 100.0% |
| 1zodA01 | 3.90.1150.10 | Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 | 0.58 | 38.0 | 3.99e-01 | 70.5% | 71.6% |
| 3n79A01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.58 | 30.0 | 4.12e-01 | 85.3% | 100.0% |
| 3c0wA02 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.58 | 32.0 | 3.75e-01 | 77.6% | 77.7% |
| 6u9hF02 | 3.30.70.1150 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT-like. Chain A, domain 2 | 0.56 | 27.0 | 3.70e-01 | 84.6% | 90.9% |
| 1mw7A03 | 3.30.70.980 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › YebC, transcriptional regulation domain | 0.56 | 28.0 | 3.79e-01 | 85.3% | 97.3% |
| 3gfhA01 | 3.30.70.1710 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain | 0.55 | 36.0 | 4.16e-01 | 83.3% | 92.7% |
| 4yhxA01 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.55 | 31.0 | 3.30e-01 | 76.9% | 60.3% |
| 1s12A00 | 3.30.70.1490 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp | 0.54 | 27.0 | 3.38e-01 | 97.4% | 77.7% |
| 5trdA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.54 | 27.0 | 3.49e-01 | 78.2% | 85.7% |
| 5a72A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.53 | 31.0 | 3.10e-01 | 76.3% | 54.1% |
| 7n0eB02 | 3.30.565.10 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain | 0.53 | 35.0 | 3.92e-01 | 88.5% | 86.1% |
| 2e9hA01 | 3.30.30.170 | Alpha Beta › 2-Layer Sandwich › Defensin A-like › | 0.52 | 32.0 | 3.67e-01 | 85.3% | 83.2% |
| 1bgxT05 | 3.30.70.370 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.51 | 33.0 | 3.65e-01 | 100.0% | 81.1% |
| 3ofgB00 | 3.30.70.260 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain | 0.51 | 29.0 | 3.65e-01 | 84.6% | 96.6% |
| 1af5A00 | 3.10.28.10 | Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases | 0.51 | 30.0 | 3.25e-01 | 76.3% | 67.5% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3404332 | 304.7.1.1 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors › Propep_M14 | 0.67 | 30.0 | 3.98e-01 | 85.3% | 75.6% |
| 4122798 | 242.1.1.6 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_WhiA | 0.66 | 34.0 | 4.07e-01 | 78.2% | 73.3% |
| 4223303 | 304.37.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 › NIR_SIR_ferr | 0.65 | 34.0 | 4.43e-01 | 90.4% | 91.8% |
| 5008379 | 304.37.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 › NIR_SIR_ferr | 0.64 | 29.0 | 4.24e-01 | 88.5% | 95.7% |
| 2521280 | 241.5.1.1 ↗ | a+b two layers › Type III secretory system chaperone-like › DNA-binding C-terminal domain of the transcription factor MotA › DNA-binding C-terminal domain of the transcription factor MotA › MotCF | 0.62 | 39.0 | 4.50e-01 | 76.9% | 84.3% |
| 2834167 | 304.37.1.1 ↗ | a+b two layers › Alpha-beta plaits › Sulfite reductase, domains 1 and 3 › Sulfite reductase, domains 1 and 3 › NIR_SIR_ferr | 0.62 | 32.0 | 4.31e-01 | 71.8% | 93.9% |
| 4953268 | 327.11.2.83 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_DUF2096_C | 0.62 | 28.0 | 4.12e-01 | 94.2% | 100.0% |
| 3251998 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.61 | 32.0 | 3.76e-01 | 78.2% | 71.4% |
| 3603319 | 304.8.1.7 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C | 0.61 | 28.0 | 3.81e-01 | 84.0% | 83.7% |
| 3177415 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.60 | 32.0 | 3.69e-01 | 77.6% | 69.1% |
| 4127516 | 101.1.2.28 ↗ | alpha arrays › HTH › HTH › winged helix domain › eIF-5_eIF-2B | 0.59 | 30.0 | 4.10e-01 | 82.7% | 100.0% |
| 5037946 | 304.8.1.7 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C | 0.58 | 27.0 | 3.67e-01 | 84.6% | 85.9% |
| 4435772 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.57 | 42.0 | 4.66e-01 | 91.7% | 95.9% |
| 4957627 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.56 | 39.0 | 4.40e-01 | 92.9% | 94.8% |
| 4572176 | 304.120.1.6 ↗ | a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › ThiI_fer | 0.55 | 28.0 | 3.88e-01 | 80.8% | 100.0% |
| 5000489 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.54 | 38.0 | 4.32e-01 | 91.7% | 97.4% |
| 3758608 | 320.4.1.7 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain › PF26117 | 0.53 | 31.0 | 3.46e-01 | 82.1% | 71.7% |
| 3674181 | 304.8.1.7 ↗ | a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ALS_ss_C | 0.53 | 28.0 | 3.44e-01 | 85.3% | 79.0% |
| 4990794 | 304.7.1.0 ↗ | a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors | 0.53 | 31.0 | 3.73e-01 | 82.7% | 85.7% |
| 3724679 | 7577.1.1.30 ↗ | a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_5, KYNU_C | 0.53 | 40.0 | 2.85e-01 | 78.2% | 96.0% |
| 4222799 | 242.1.1.1 ↗ | a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_1 | 0.53 | 30.0 | 3.06e-01 | 76.3% | 53.5% |
| 5047455 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.53 | 38.0 | 4.25e-01 | 90.4% | 96.7% |
| 4167287 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.52 | 38.0 | 4.20e-01 | 91.7% | 96.7% |
| 3962151 | 327.11.2.1 ↗ | a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 | 0.51 | 28.0 | 3.61e-01 | 90.4% | 95.3% |
| 4122987 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.51 | 36.0 | 4.07e-01 | 92.9% | 97.4% |
| 4927259 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.51 | 37.0 | 4.08e-01 | 90.4% | 93.6% |
| 3454319 | 5104.1.1.1 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › DHHA1 | 0.51 | 39.0 | 4.17e-01 | 90.4% | 93.3% |
| 5078854 | 5104.1.1.0 ↗ | a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases | 0.51 | 37.0 | 4.07e-01 | 92.3% | 94.4% |
| 4929751 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.50 | 25.0 | 3.25e-01 | 80.8% | 85.9% |