←Back to structures
LSDeep1_scaffold_42_prodigal-single.1__X__X__00431
Bact-VirLSDeep1_scaffold_42_prodigal-single.1__X__X__00431
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 27-119
Domain cluster:
representative
CATH (38)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3fp3A01 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.71 | 43.0 | 3.75e-01 | 95.7% | 40.7% |
| 2f8lA01 | 1.10.150.470 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.70 | 55.0 | 5.87e-01 | 88.2% | 97.5% |
| 2imsA00 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.69 | 50.0 | 4.19e-01 | 97.8% | 44.2% |
| 3m71A00 | 1.50.10.150 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Voltage-dependent anion channel | 0.66 | 51.0 | 3.54e-01 | 82.8% | 95.8% |
| 6vvoE02 | 1.20.272.10 | Mainly Alpha › Up-down Bundle › Zinc Finger, Delta Prime; domain 3 › | 0.65 | 40.0 | 3.97e-01 | 93.5% | 57.6% |
| 2l3lA01 | 1.20.58.1250 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Tubulin Binding Cofactor C, N-terminal domain | 0.64 | 48.0 | 4.63e-01 | 97.8% | 69.8% |
| 4b94A00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.63 | 42.0 | 3.71e-01 | 94.6% | 45.4% |
| 2hh6A00 | 1.10.1900.10 | Mainly Alpha › Orthogonal Bundle › c-terminal domain of poly(a) binding protein › c-terminal domain of poly(a) binding protein | 0.63 | 33.0 | 3.13e-01 | 75.3% | 40.5% |
| 2hujA00 | 1.20.120.440 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like | 0.63 | 48.0 | 4.37e-01 | 80.6% | 93.6% |
| 1yxrA01 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.63 | 45.0 | 4.88e-01 | 94.6% | 93.2% |
| 3hiuD00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.61 | 46.0 | 3.91e-01 | 80.6% | 71.1% |
| 2uubT00 | 1.20.58.110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Ribosomal protein S20 | 0.60 | 44.0 | 4.40e-01 | 96.8% | 73.7% |
| 4c9bB00 | 1.25.40.180 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.60 | 38.0 | 2.76e-01 | 93.5% | 20.9% |
| 1abvA00 | 1.10.520.20 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › N-terminal domain of the delta subunit of the F1F0-ATP synthase | 0.59 | 50.0 | 4.83e-01 | 94.6% | 95.2% |
| 3axjB02 | 1.20.58.200 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 | 0.59 | 45.0 | 4.65e-01 | 98.9% | 89.4% |
| 1orjD00 | 1.20.120.340 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Flagellar protein FliS | 0.58 | 46.0 | 4.24e-01 | 87.1% | 98.4% |
| 2ra1A03 | 1.20.58.770 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.58 | 38.0 | 4.43e-01 | 96.8% | 100.0% |
| 4epzA00 | 1.25.40.810 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › UpxZ | 0.58 | 37.0 | 3.17e-01 | 97.8% | 38.3% |
| 1bgcA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.58 | 52.0 | 4.31e-01 | 97.8% | 74.1% |
| 2d9dA00 | 1.20.58.120 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › BAG domain | 0.57 | 45.0 | 4.62e-01 | 98.9% | 88.8% |
| 2etdA00 | 1.20.1440.20 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › LemA-like domain | 0.57 | 50.0 | 4.31e-01 | 100.0% | 62.4% |
| 4dxwA02 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.56 | 39.0 | 3.73e-01 | 73.1% | 66.1% |
| 2yb5F01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.55 | 40.0 | 4.20e-01 | 76.3% | 100.0% |
| 2ot4A03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.55 | 38.0 | 3.60e-01 | 79.6% | 60.7% |
| 4u7iA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.55 | 45.0 | 4.51e-01 | 96.8% | 89.2% |
| 4bwrA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.55 | 38.0 | 2.45e-01 | 95.7% | 14.3% |
| 1e3pA02 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.55 | 43.0 | 4.48e-01 | 98.9% | 96.4% |
| 6ljaA01 | 1.50.10.100 | Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › Chondroitin AC/alginate lyase | 0.55 | 38.0 | 2.60e-01 | 97.8% | 18.9% |
| 2fji101 | 1.10.357.50 | Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › | 0.54 | 49.0 | 3.72e-01 | 97.8% | 56.9% |
| 1x04A00 | 1.20.1270.60 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain | 0.54 | 41.0 | 3.19e-01 | 80.6% | 39.0% |
| 3fxhA00 | 1.20.120.600 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Crystal structure from the mobile metagenome of halifax harbour sewage outfall | 0.54 | 46.0 | 4.36e-01 | 96.8% | 80.5% |
| 5eo6B00 | 3.40.1500.10 | Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › Coproporphyrinogen III oxidase, aerobic | 0.53 | 42.0 | 2.92e-01 | 84.9% | 63.5% |
| 1wpaA01 | 6.10.140.340 | Special › Helix non-globular › Helix Hairpins › | 0.53 | 40.0 | 3.98e-01 | 80.6% | 75.8% |
| 7twaC00 | 1.20.910.10 | Mainly Alpha › Up-down Bundle › Heme Oxygenase; Chain A › Heme oxygenase-like | 0.52 | 44.0 | 3.40e-01 | 94.6% | 65.2% |
| 5u9nB00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.52 | 46.0 | 4.28e-01 | 100.0% | 87.5% |
| 3l8rA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.51 | 45.0 | 4.43e-01 | 100.0% | 93.1% |
| 6tkyA03 | 1.20.58.740 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › DOCK DHR2 domain, lobe C | 0.51 | 45.0 | 4.11e-01 | 97.8% | 77.0% |
| 3w0lD02 | 3.40.50.10490 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 | 0.51 | 41.0 | 2.91e-01 | 93.5% | 74.6% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3613903 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.65 | 47.0 | 3.93e-01 | 97.8% | 43.8% |
| 4087510 | 4006.1.1.1 ↗ | alpha bundles › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › Release factor (Pfam 00472) N-terminal alpha helical domain › PCRF | 0.65 | 39.0 | 3.68e-01 | 80.6% | 48.7% |
| 4527487 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 40.0 | 3.68e-01 | 97.8% | 47.5% |
| 3931763 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.64 | 45.0 | 4.20e-01 | 96.8% | 59.1% |
| 3346499 | 109.4.1.46 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › IBN_N | 0.63 | 41.0 | 3.66e-01 | 94.6% | 45.2% |
| 3783832 | 3684.1.1.0 ↗ | alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like | 0.62 | 45.0 | 3.98e-01 | 78.5% | 100.0% |
| 3889971 | 109.4.1.1643 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RSLD_CPSF6 | 0.61 | 44.0 | 4.22e-01 | 98.9% | 64.5% |
| 3924801 | 109.4.1.1643 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › RSLD_CPSF6 | 0.61 | 44.0 | 4.42e-01 | 98.9% | 74.7% |
| 1723359 | 109.4.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Arm | 0.60 | 38.0 | 4.05e-01 | 95.7% | 74.7% |
| 3376126 | 109.4.1.1718 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › PF26716 | 0.59 | 42.0 | 3.94e-01 | 100.0% | 60.0% |
| 4026731 | 197.1.1.3 ↗ | alpha bundles › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › Acyl-CoA binding protein-like › ACBP | 0.59 | 41.0 | 4.10e-01 | 72.0% | 70.5% |
| 3593820 | 1002.1.1.0 ↗ | alpha complex topology › Fluoride ion channel › Fluoride ion channel › Fluoride ion channel | 0.59 | 48.0 | 4.48e-01 | 100.0% | 72.2% |
| 3981020 | 2007.5.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › Lipase_GDSL | 0.58 | 46.0 | 3.18e-01 | 87.1% | 41.2% |
| 3355292 | 601.1.1.66 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin › At5g52880_ARM | 0.58 | 42.0 | 4.03e-01 | 95.7% | 65.5% |
| 3394451 | 6155.1.1.1 ↗ | alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › MtN3_slv | 0.57 | 46.0 | 4.13e-01 | 100.0% | 62.3% |
| 3942475 | 628.1.1.1 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › FCD | 0.57 | 49.0 | 4.17e-01 | 95.7% | 76.8% |
| 3311490 | 622.1.1.1 ↗ | alpha bundles › YvfG-like › HSC20 (HSCB), C-terminal oligomerisation domain › HSC20 (HSCB), C-terminal oligomerisation domain › HSCB_C | 0.56 | 42.0 | 4.43e-01 | 95.7% | 89.4% |
| 3222378 | 5057.1.1.1 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neur_chan_memb | 0.56 | 48.0 | 4.03e-01 | 100.0% | 55.6% |
| 3580280 | 604.1.1.192 ↗ | alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › PF26998 | 0.55 | 47.0 | 4.74e-01 | 97.8% | 91.6% |
| 4955306 | 1188.1.1.3 ↗ | alpha bundles › ZIP zinc transporter › ZIP zinc transporter › ZIP zinc transporter › Mntp | 0.54 | 46.0 | 3.85e-01 | 95.7% | 90.6% |
| 3643902 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.54 | 46.0 | 4.09e-01 | 92.5% | 79.2% |
| 3919099 | 621.1.1.8 ↗ | alpha bundles › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain › GVIN1 | 0.53 | 47.0 | 4.20e-01 | 100.0% | 85.2% |
| 3717487 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.53 | 48.0 | 3.17e-01 | 100.0% | 25.1% |
| 3294636 | 3755.3.1.0 ↗ | alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin | 0.52 | 44.0 | 4.16e-01 | 92.5% | 89.6% |
| 3200320 | 109.54.1.2 ↗ | alpha superhelices › Repetitive alpha hairpins › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › C-terminal tetramerization domain of Utp1/Utp21/Utp12/Utp13 › Utp21 | 0.52 | 47.0 | 3.44e-01 | 100.0% | 54.8% |
| 5057697 | 2.14.1.0 ↗ | beta barrels › OB-fold › HupF/HypC-like › HupF/HypC-like | 0.52 | 45.0 | 3.63e-01 | 95.7% | 57.8% |
| 3404270 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.51 | 39.0 | 3.46e-01 | 79.6% | 93.1% |
| 4999330 | 604.12.1.135 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › Oxidored_q2 | 0.51 | 43.0 | 4.30e-01 | 97.8% | 89.0% |
| 3393849 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.51 | 44.0 | 3.93e-01 | 97.8% | 85.0% |
| 3384991 | 109.4.1.1739 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Cohesin_HEAT, Nipped-B_C, PDS5 | 0.51 | 44.0 | 2.56e-01 | 97.8% | 24.8% |