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LSDeep1_scaffold_42_prodigal-single.1__X__X__00464
Bact-VirLSDeep1_scaffold_42_prodigal-single.1__X__X__00464
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 16-190
Domain cluster:
rep: BML_coassembly_scaffold_50_prodigal-single.1__X__X__00038__D347-509
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13563.13 best | 2_5_RNA_ligase2 | 38.8 | 1.30e-09 | 84.6% | 82.9% |
CATH (8)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1vdxA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.82 | 72.0 | 7.10e-01 | 90.9% | 98.4% |
| 2d4gA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.81 | 71.0 | 7.28e-01 | 90.3% | 98.8% |
| 1iuhA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.81 | 71.0 | 7.01e-01 | 90.9% | 97.3% |
| 4qakA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.78 | 68.0 | 6.95e-01 | 91.4% | 98.2% |
| 4h7wA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.76 | 66.0 | 6.49e-01 | 91.4% | 98.9% |
| 2vfkA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.74 | 69.0 | 6.54e-01 | 100.0% | 98.0% |
| 2fsqA00 | 3.90.1140.10 | Alpha Beta › Alpha-Beta Complex › Cyclic Phosphodiesterase; Chain: A, › Cyclic phosphodiesterase | 0.69 | 63.0 | 5.75e-01 | 98.9% | 92.7% |
| 3k59A01 | 2.40.50.590 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › DNA polymerase B, N domain, beta-barrel | 0.52 | 22.0 | 2.98e-01 | 82.3% | 76.5% |
ECOD (64)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4951894 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.83 | 72.0 | 6.93e-01 | 90.3% | 87.7% |
| 4930187 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.83 | 73.0 | 7.10e-01 | 91.4% | 98.4% |
| None | — | 0.82 | 72.0 | 7.10e-01 | 90.9% | 98.4% | |
| 5042461 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.82 | 72.0 | 7.06e-01 | 91.4% | 98.4% |
| 4965540 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.82 | 72.0 | 7.07e-01 | 90.9% | 99.5% |
| 4453123 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 70.0 | 6.98e-01 | 89.1% | 98.3% |
| 5061864 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.82 | 70.0 | 6.84e-01 | 88.0% | 94.6% |
| 4942504 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 72.0 | 7.06e-01 | 90.9% | 98.9% |
| 4952280 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.82 | 70.0 | 6.98e-01 | 89.1% | 99.4% |
| 5011802 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.82 | 71.0 | 6.66e-01 | 90.3% | 84.9% |
| None | — | 0.81 | 72.0 | 7.06e-01 | 91.4% | 98.9% | |
| 277 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 71.0 | 7.01e-01 | 90.9% | 97.3% |
| 4956981 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 71.0 | 7.02e-01 | 91.4% | 98.9% |
| 5000045 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 71.0 | 7.00e-01 | 91.4% | 98.4% |
| 5030633 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 71.0 | 6.95e-01 | 91.4% | 97.9% |
| 5010662 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.81 | 71.0 | 6.98e-01 | 91.4% | 97.8% |
| 5039548 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.81 | 70.0 | 6.99e-01 | 90.9% | 98.9% |
| 4019568 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.80 | 69.0 | 6.72e-01 | 89.7% | 98.9% |
| 4994515 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.80 | 69.0 | 6.87e-01 | 89.7% | 98.9% |
| 4949121 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.80 | 70.0 | 6.97e-01 | 90.9% | 99.4% |
| 4968059 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.80 | 69.0 | 6.82e-01 | 89.1% | 97.8% |
| 3397353 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.80 | 70.0 | 6.91e-01 | 91.4% | 98.9% |
| None | — | 0.80 | 69.0 | 6.91e-01 | 90.9% | 98.9% | |
| 4982807 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.80 | 70.0 | 6.87e-01 | 91.4% | 99.5% |
| 3464521 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.79 | 68.0 | 6.28e-01 | 90.3% | 95.0% |
| 4957217 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.79 | 70.0 | 6.93e-01 | 91.4% | 98.9% |
| 4967857 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.79 | 66.0 | 6.59e-01 | 86.9% | 97.8% |
| 3179394 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.79 | 68.0 | 6.05e-01 | 90.3% | 97.9% |
| 5051264 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.79 | 68.0 | 6.82e-01 | 89.7% | 98.3% |
| 3270425 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.79 | 68.0 | 6.58e-01 | 90.9% | 99.0% |
| 4951796 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.79 | 69.0 | 6.56e-01 | 91.4% | 100.0% |
| 5047137 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.78 | 68.0 | 6.74e-01 | 91.4% | 98.9% |
| 3339513 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.78 | 67.0 | 6.77e-01 | 90.3% | 99.4% |
| 3731250 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.78 | 68.0 | 6.50e-01 | 91.4% | 98.0% |
| 5026546 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.78 | 67.0 | 6.71e-01 | 90.3% | 99.4% |
| 3738455 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.78 | 67.0 | 6.45e-01 | 89.7% | 99.5% |
| 2322578 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.78 | 68.0 | 6.68e-01 | 91.4% | 98.4% |
| 4979619 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.78 | 64.0 | 6.53e-01 | 85.1% | 98.8% |
| 3531648 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.78 | 67.0 | 6.65e-01 | 89.7% | 99.4% |
| 5029239 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.78 | 68.0 | 6.78e-01 | 90.9% | 98.9% |
| None | — | 0.78 | 64.0 | 6.50e-01 | 85.1% | 99.4% | |
| 3739681 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.78 | 67.0 | 6.41e-01 | 90.9% | 98.5% |
| 5036038 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.78 | 68.0 | 6.72e-01 | 90.9% | 100.0% |
| 5019632 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.77 | 67.0 | 6.17e-01 | 90.9% | 95.9% |
| 5063905 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.77 | 67.0 | 6.90e-01 | 90.9% | 98.8% |
| 4972958 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.77 | 68.0 | 6.66e-01 | 91.4% | 99.5% |
| 3205096 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.77 | 71.0 | 6.96e-01 | 96.6% | 98.9% |
| 3181856 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.76 | 70.0 | 6.39e-01 | 96.6% | 98.2% |
| 3412490 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.76 | 71.0 | 6.69e-01 | 98.9% | 99.0% |
| 3937447 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.76 | 71.0 | 6.65e-01 | 98.9% | 98.1% |
| 3233020 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.76 | 69.0 | 6.70e-01 | 96.6% | 98.9% |
| 4929565 | 264.1.1.1 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › LigT_PEase | 0.75 | 65.0 | 6.51e-01 | 90.9% | 98.9% |
| 2773887 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.75 | 66.0 | 6.14e-01 | 93.1% | 98.6% |
| 3962197 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.75 | 65.0 | 6.60e-01 | 90.3% | 100.0% |
| 3253597 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.75 | 71.0 | 6.88e-01 | 100.0% | 100.0% |
| 3479830 | 264.1.1.0 ↗ | beta barrels › LigT-like › LigT-related › LigT-related | 0.75 | 70.0 | 6.77e-01 | 98.9% | 99.5% |
| 5062926 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.75 | 65.0 | 6.74e-01 | 90.9% | 97.6% |
| 3216833 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.75 | 68.0 | 6.29e-01 | 96.6% | 99.1% |
| 2323955 | 264.1.1.6 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › HVSL | 0.73 | 64.0 | 6.05e-01 | 92.6% | 99.0% |
| 3250014 | 264.1.1.9 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › 2_5_RNA_ligase2 | 0.73 | 55.0 | 6.17e-01 | 96.6% | 97.1% |
| 4026533 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.73 | 68.0 | 6.53e-01 | 100.0% | 100.0% |
| 3894760 | 264.1.1.7 ↗ | beta barrels › LigT-like › LigT-related › LigT-related › AKAP7_NLS | 0.72 | 68.0 | 6.53e-01 | 100.0% | 99.0% |
| 4976869 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.53 | 22.0 | 2.69e-01 | 82.3% | 55.7% |
| 5055355 | 2.1.1.0 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein | 0.52 | 22.0 | 2.96e-01 | 82.9% | 72.2% |