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LSDeep1_scaffold_42_prodigal-single.1__X__X__00499
Bact-VirLSDeep1_scaffold_42_prodigal-single.1__X__X__00499
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-48_82-112_154-183
Domain cluster:
representative
Pfam (3)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF11655.14 best | DUF2589 | 38.5 | 2.10e-09 | 34.9% | 22.7% |
| PF11655.14 | DUF2589 | 30.4 | 6.40e-07 | 33.0% | 20.8% |
| PF11655.14 | DUF2589 | 24.2 | 5.40e-05 | 30.3% | 19.5% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1p1hB01 | 3.30.2360.10 | Alpha Beta › 2-Layer Sandwich › Glyceraldehyde-3-phosphate dehydrogenase-like fold › Glyceraldehyde-3-phosphate dehydrogenase-like domain | 0.54 | 28.0 | 2.39e-01 | 79.8% | 28.4% |
| 2r76A00 | 3.30.160.150 | Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain | 0.51 | 30.0 | 2.91e-01 | 89.9% | 47.7% |
ECOD (8)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3249830 | 5086.1.1.0 ↗ | alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins | 0.61 | 46.0 | 4.44e-01 | 79.8% | 80.8% |
| 3499265 | 3542.1.1.3 ↗ | alpha arrays › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Presenilin family intramembrane aspartate proteases › Peptidase_A22B | 0.58 | 44.0 | 3.16e-01 | 80.7% | 92.5% |
| 3939681 | 5001.1.1.41 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7TM_GPCR_Srw | 0.58 | 41.0 | 2.93e-01 | 74.3% | 33.3% |
| 5072826 | 878.1.1.0 ↗ | a+b two layers › Hypothetical protein MTH677 › Hypothetical protein MTH677 › Hypothetical protein MTH677 | 0.56 | 30.0 | 3.33e-01 | 82.6% | 61.8% |
| 3914722 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 29.0 | 3.29e-01 | 78.9% | 68.0% |
| 3505289 | 2004.1.1.19 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras | 0.55 | 30.0 | 2.49e-01 | 71.6% | 27.8% |
| 3639274 | 261.1.1.1 ↗ | a+b complex topology › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › Hect, E3 ligase catalytic domain › HECT | 0.53 | 41.0 | 2.63e-01 | 81.7% | 72.7% |
| 3214850 | 5001.1.1.1 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_1 | 0.51 | 39.0 | 2.72e-01 | 78.9% | 58.6% |