Back to structures

LSDeep1_scaffold_42_prodigal-single.1__X__X__00512

Bact-Vir

LSDeep1_scaffold_42_prodigal-single.1__X__X__00512

Identity

Kingdom:
phage

Quality

87.3 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-75
PDB
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2yweA03 3.30.70.870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Elongation Factor G (Translational Gtpase), domain 3 0.67 49.0 4.81e-01 79.5% 80.5%
3c1mA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.64 44.0 3.41e-01 71.2% 39.6%
3dfeA00 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 45.0 4.35e-01 75.3% 70.7%
4e1oA03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.63 43.0 3.96e-01 71.2% 70.4%
2cdqA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.62 44.0 4.27e-01 75.3% 76.2%
2qsrA01 3.90.1150.50 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Transcription-repair-coupling factor, D7 domain 0.62 48.0 3.84e-01 86.3% 46.5%
2od4B01 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 44.0 4.15e-01 75.3% 77.5%
2ewhA01 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.62 46.0 4.41e-01 80.8% 72.9%
3hyiA01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.61 53.0 3.98e-01 100.0% 76.4%
2yweA04 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 43.0 3.75e-01 75.3% 50.9%
3n79A01 3.30.70.1710 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › BMC (bacterial microcompartment) domain 0.61 43.0 4.24e-01 75.3% 75.6%
2re1A02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.60 43.0 4.31e-01 75.3% 82.4%
2ehpA00 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.60 43.0 3.73e-01 78.1% 87.1%
1vx4407 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 42.0 4.32e-01 75.3% 87.0%
1vi7A02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.60 42.0 4.24e-01 75.3% 76.1%
2wbmA03 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 41.0 4.25e-01 75.3% 78.6%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.59 44.0 4.00e-01 82.2% 64.1%
2phcB01 3.30.1360.40 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › 0.58 43.0 4.22e-01 83.6% 90.4%
3e3xA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 41.0 3.81e-01 75.3% 59.6%
2hfsA02 3.30.70.890 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain 0.58 42.0 3.46e-01 79.5% 85.6%
3b82A06 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 43.0 3.68e-01 80.8% 49.6%
2a6mA00 3.30.70.1290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Transposase IS200-like 0.57 46.0 3.91e-01 91.8% 64.6%
3tviA02 3.30.2130.10 Alpha Beta › 2-Layer Sandwich › VC0802-like › VC0802-like 0.56 41.0 3.28e-01 80.8% 40.3%
3hv1B01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.56 43.0 3.51e-01 87.7% 88.9%
2dt9A01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 41.0 4.12e-01 80.8% 83.8%
1m0sA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.55 40.0 4.08e-01 79.5% 84.7%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.55 40.0 3.78e-01 82.2% 71.1%
2m88A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 40.0 3.87e-01 79.5% 72.1%
4la9A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.55 45.0 3.84e-01 94.5% 96.9%
1r89A03 3.30.70.590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain 0.55 42.0 3.52e-01 84.9% 60.4%
1x4dA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 41.0 3.79e-01 84.9% 65.7%
2rt3A00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.55 40.0 3.71e-01 79.5% 66.0%
3jb9a02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 37.0 3.95e-01 79.5% 85.7%
1u8sA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 42.0 4.03e-01 84.9% 80.2%
5xamA02 3.30.70.3220 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 38.0 3.05e-01 75.3% 42.9%
3mahA02 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.54 38.0 3.89e-01 75.3% 85.5%
3zrpA02 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.54 39.0 3.46e-01 80.8% 53.8%
3ix1A01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.54 42.0 3.18e-01 89.0% 71.2%
7qh2C03 3.30.70.2740 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 37.0 3.72e-01 75.3% 92.3%
3mtjA03 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 41.0 4.10e-01 84.9% 81.6%
1kzfA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 36.0 2.67e-01 71.2% 27.8%
4f3sA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 43.0 3.66e-01 94.5% 94.7%
2jheA01 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.53 39.0 3.80e-01 80.8% 76.5%
3tp2B02 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 40.0 3.79e-01 87.7% 83.2%
4eswA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 43.0 3.16e-01 97.3% 92.6%
2hiyA01 3.30.70.1280 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › SP0830-like domains 0.52 40.0 3.80e-01 84.9% 76.1%
6swc801 3.30.30.170 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.52 41.0 3.64e-01 91.8% 60.3%
1wg1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 39.0 4.00e-01 84.9% 88.7%
1wexA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.51 38.0 3.88e-01 84.9% 90.4%
2b4vA03 3.30.70.1970 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 39.0 3.60e-01 84.9% 69.7%
2cpjA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.50 38.0 3.54e-01 84.9% 62.6%
2ofhX00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.50 36.0 3.63e-01 76.7% 87.3%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3283289 304.163.1.4 a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF30808 0.69 49.0 5.11e-01 79.5% 83.1%
4133554 304.24.1.21 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C+EFG_III 0.66 49.0 3.64e-01 79.5% 34.7%
4063927 304.24.1.1 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.66 48.0 3.61e-01 79.5% 34.7%
4165721 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.65 46.0 4.76e-01 76.7% 95.7%
5036839 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.63 45.0 4.62e-01 75.3% 81.2%
3203939 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.63 47.0 4.78e-01 86.3% 82.9%
3972361 304.5.1.0 a+b two layers › Alpha-beta plaits › GlnB-like › GlnB-like 0.63 44.0 4.18e-01 75.3% 64.4%
3253884 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.63 44.0 4.63e-01 75.3% 92.3%
5075587 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.63 44.0 4.35e-01 75.3% 80.0%
3254124 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.62 46.0 3.95e-01 79.5% 51.7%
4929225 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.62 44.0 3.53e-01 75.3% 42.7%
5069993 4070.1.1.4 alpha arrays › FtsH protease domain-like › FtsH protease domain-like › FtsH protease domain-like › Peptidase_M50B 0.62 49.0 3.70e-01 94.5% 34.8%
3631880 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.62 46.0 4.58e-01 80.8% 97.3%
4337010 101.1.9.0 alpha arrays › HTH › HTH › Putative DNA-binding domain 0.61 44.0 4.29e-01 76.7% 96.2%
4978219 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.61 43.0 4.15e-01 75.3% 65.9%
4989902 7592.1.1.5 a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csx1_CARF 0.61 46.0 3.09e-01 82.2% 19.7%
4956901 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.61 43.0 4.14e-01 75.3% 72.9%
4226244 304.24.1.1 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.61 43.0 3.73e-01 75.3% 50.4%
5082595 304.8.1.10 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_7 0.61 43.0 4.49e-01 75.3% 95.4%
3983718 304.48.1.14 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF 0.60 46.0 4.04e-01 84.9% 69.6%
4033642 304.8.1.42 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF3388 0.60 42.0 3.93e-01 75.3% 65.3%
4191626 304.24.1.1 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.60 42.0 4.15e-01 75.3% 68.8%
3786894 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.60 42.0 4.12e-01 75.3% 81.2%
5025962 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 42.0 4.15e-01 75.3% 80.0%
5066741 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.59 42.0 4.04e-01 75.3% 72.9%
5072282 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.59 42.0 3.93e-01 75.3% 68.9%
3218989 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.59 42.0 3.94e-01 78.1% 86.3%
4964356 304.8.1.125 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › DUF7523 0.59 43.0 3.81e-01 79.5% 56.9%
5063532 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.58 41.0 4.10e-01 75.3% 73.3%
4358940 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.58 43.0 4.14e-01 80.8% 76.5%
3265307 304.24.1.1 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › EFG_C 0.58 43.0 3.82e-01 80.8% 53.6%
3218069 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.58 41.0 4.27e-01 75.3% 100.0%
3508423 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.57 42.0 3.99e-01 79.5% 81.1%
3489893 304.24.1.6 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like › SBDS_C 0.56 40.0 3.90e-01 75.3% 70.0%
2832042 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.56 44.0 3.97e-01 86.3% 67.6%
3227219 304.120.1.10 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI › PF25904 0.56 40.0 4.05e-01 75.3% 85.7%
4939665 304.120.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin-like domain in ThiI › Ferredoxin-like domain in ThiI 0.56 43.0 4.33e-01 84.9% 84.0%
4947074 304.24.1.0 a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.56 41.0 4.18e-01 79.5% 81.4%
4934562 304.8.1.21 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT_9 0.56 41.0 4.03e-01 80.8% 82.5%
2832043 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.55 43.0 3.79e-01 86.3% 61.6%
4953963 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.55 40.0 3.98e-01 79.5% 77.3%
4643299 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 42.0 4.05e-01 84.9% 74.1%
5071707 304.19.1.4 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › DUF2110_N 0.54 38.0 3.82e-01 75.3% 88.0%
3742864 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 38.0 3.40e-01 75.3% 57.3%
5055913 304.4.1.0 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.54 41.0 3.68e-01 84.9% 63.6%
138899 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.54 38.0 3.73e-01 75.3% 73.8%
3877940 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.53 39.0 4.02e-01 80.8% 98.6%
3802146 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.53 41.0 3.67e-01 86.3% 59.1%
3273242 304.9.1.9 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_2 0.53 40.0 2.95e-01 84.9% 30.2%
3942221 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 39.0 3.94e-01 80.8% 82.7%
5069375 304.20.1.4 a+b two layers › Alpha-beta plaits › PAP/Archaeal CCA-adding enzyme, C-terminal domain › PAP/Archaeal CCA-adding enzyme, C-terminal domain › CAA_C 0.53 40.0 3.38e-01 82.2% 89.8%
4006107 304.8.1.2 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › ACT 0.53 39.0 3.91e-01 80.8% 82.7%
4316518 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.53 41.0 3.96e-01 90.4% 90.0%
4582873 327.11.2.1 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_1 0.53 39.0 4.00e-01 80.8% 97.1%
3637642 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.52 40.0 3.63e-01 87.7% 70.9%
3818049 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.52 40.0 3.54e-01 86.3% 56.5%
3396525 327.11.2.20 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › BICC1_KH 0.52 38.0 3.85e-01 80.8% 96.0%
4882160 304.9.1.1 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 0.51 38.0 3.83e-01 80.8% 85.3%
4951776 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 40.0 3.78e-01 89.0% 78.9%
3803779 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.51 36.0 3.60e-01 75.3% 73.3%
3318862 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.51 37.0 3.58e-01 79.5% 74.1%
4225205 304.9.1.0 a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.50 39.0 3.48e-01 86.3% 66.4%
5034050 876.1.1.10 a+b complex topology › ParB/Sulfiredoxin › ParB/Sulfiredoxin › ParB/Sulfiredoxin › DUF1015 0.50 44.0 3.07e-01 97.3% 52.7%
4029253 327.11.2.0 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) 0.50 39.0 4.04e-01 89.0% 98.6%
4206728 304.110.1.1 a+b two layers › Alpha-beta plaits › Acylphosphatase-like › Acylphosphatase-like › Acylphosphatase 0.50 38.0 3.57e-01 84.9% 68.8%