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LSDeep1_scaffold_42_prodigal-single.1__X__X__00514
Bact-VirLSDeep1_scaffold_42_prodigal-single.1__X__X__00514
Identity
- Kingdom:
- phage
Quality
75.4
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 31-128
D2
high
residues 187-321
Domain cluster:
rep: MT028491.1__QIG65715.1__phiOC_p049__00049__D194-332
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ac9C04 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.69 | 41.0 | 5.09e-01 | 83.7% | 97.5% |
| 3dclA02 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.69 | 46.0 | 5.49e-01 | 82.2% | 100.0% |
| 2lp6A00 | 2.40.10.190 | Mainly Beta › Beta Barrel › Thrombin, subunit H › translation elongation factor selb, chain A, domain 4 | 0.68 | 45.0 | 5.38e-01 | 74.1% | 100.0% |
| 2dyiA01 | 2.40.30.60 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM | 0.65 | 41.0 | 5.00e-01 | 85.2% | 100.0% |
| 3zugB02 | 2.40.30.30 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Riboflavin kinase-like | 0.62 | 44.0 | 4.37e-01 | 72.6% | 96.5% |
| 2dpyA00 | 3.40.50.12240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.57 | 43.0 | 3.03e-01 | 79.3% | 53.3% |
| 2bseA00 | 2.60.40.1830 | Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain | 0.56 | 33.0 | 3.69e-01 | 78.5% | 72.9% |
| 1vq8T00 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 35.0 | 3.77e-01 | 86.7% | 73.1% |
| 5xnrA01 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.54 | 33.0 | 3.47e-01 | 83.7% | 64.6% |
| 3t05A02 | 2.40.33.10 | Mainly Beta › Beta Barrel › M1 Pyruvate Kinase; Domain 3 › PK beta-barrel domain-like | 0.53 | 36.0 | 4.15e-01 | 79.3% | 96.9% |
| 7wqxA01 | 2.60.120.290 | Mainly Beta › Sandwich › Jelly Rolls › Spermadhesin, CUB domain | 0.53 | 32.0 | 3.52e-01 | 96.3% | 74.5% |
| 1w9sA00 | 2.60.120.260 | Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like | 0.52 | 34.0 | 3.44e-01 | 83.7% | 65.7% |
| 1ydxA03 | 3.90.220.20 | Alpha Beta › Alpha-Beta Complex › Adenine-n6-DNA-methyltransferase TaqI; Chain A, domain 2 › DNA methylase specificity domains | 0.51 | 33.0 | 3.31e-01 | 85.9% | 62.5% |
| 3am2A02 | 2.60.120.1050 | Mainly Beta › Sandwich › Jelly Rolls › | 0.50 | 31.0 | 3.26e-01 | 97.0% | 68.4% |
ECOD (31)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3964292 | 1.1.13.38 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_BR0599 | 0.74 | 57.0 | 6.26e-01 | 100.0% | 97.3% |
| 5073223 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 43.0 | 5.32e-01 | 83.7% | 92.9% |
| 5046975 | 1.1.7.21 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RIBIOP_C | 0.73 | 42.0 | 5.34e-01 | 83.7% | 96.2% |
| 4526316 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.73 | 40.0 | 4.70e-01 | 74.8% | 75.8% |
| 4946634 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.73 | 45.0 | 5.42e-01 | 72.6% | 92.2% |
| 4060488 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.72 | 43.0 | 5.37e-01 | 79.3% | 100.0% |
| 5024154 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 43.0 | 5.31e-01 | 84.4% | 95.3% |
| 5015718 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.71 | 42.0 | 5.15e-01 | 83.7% | 94.0% |
| 4403870 | 1.1.7.17 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N | 0.68 | 41.0 | 4.79e-01 | 78.5% | 85.3% |
| 4521518 | 1.1.7.121 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Phage_BR0599 | 0.64 | 51.0 | 5.47e-01 | 98.5% | 97.4% |
| 4956344 | 3613.1.1.0 ↗ | beta barrels › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain › Protein CLP1 C-terminal domain | 0.64 | 36.0 | 4.64e-01 | 83.0% | 98.7% |
| 4267752 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.62 | 42.0 | 4.81e-01 | 83.7% | 97.9% |
| 4229140 | 1.1.7.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM | 0.61 | 40.0 | 4.70e-01 | 83.0% | 100.0% |
| 4489240 | 1.1.7.2 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Ribosomal_L3 | 0.58 | 45.0 | 4.03e-01 | 81.5% | 98.9% |
| 4177510 | 4.1.1.295 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 | 0.58 | 35.0 | 3.67e-01 | 86.7% | 64.0% |
| 1281033 | 1.1.7.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › DUF4438 | 0.58 | 50.0 | 4.77e-01 | 93.3% | 98.8% |
| 4627066 | 1.1.7.44 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Dna2_Rift | 0.58 | 46.0 | 4.98e-01 | 90.4% | 100.0% |
| 4024915 | 4.1.1.237 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW4_SPT5 | 0.57 | 28.0 | 3.82e-01 | 71.1% | 95.4% |
| 5037204 | 4.1.1.95 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 | 0.55 | 36.0 | 3.77e-01 | 86.7% | 72.5% |
| 2675860 | 4.1.1.15 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L6e | 0.55 | 28.0 | 3.04e-01 | 75.6% | 55.3% |
| 4937910 | 4.1.1.95 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 | 0.55 | 35.0 | 3.63e-01 | 86.7% | 67.7% |
| 5028926 | 4.1.1.95 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 | 0.54 | 35.0 | 3.49e-01 | 86.7% | 62.9% |
| 4601878 | 4.1.1.295 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 | 0.54 | 35.0 | 3.56e-01 | 86.7% | 66.9% |
| 4071168 | 4.1.1.95 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 | 0.54 | 35.0 | 3.72e-01 | 86.7% | 75.7% |
| 4807995 | 4.1.1.314 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_uL24m-like | 0.54 | 38.0 | 3.06e-01 | 71.1% | 58.8% |
| 2702585 | 10.32.1.2 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › F5_F8_type_C | 0.54 | 34.0 | 3.43e-01 | 83.7% | 62.7% |
| 2491354 | 4182.1.1.3 ↗ | beta sandwiches › Agglutinin HPA-like › Agglutinin HPA-like › Agglutinin HPA-like › Gp53-like_C | 0.54 | 31.0 | 3.48e-01 | 80.7% | 76.0% |
| 4180317 | 4.1.1.295 ↗ | beta barrels › SH3 › SH3 › SH3 › KOW, Ribosomal_L26 | 0.53 | 35.0 | 3.65e-01 | 86.7% | 72.0% |
| 4311355 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.52 | 37.0 | 4.19e-01 | 80.0% | 99.0% |
| 3987212 | 1.1.15.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › PK beta-barrel domain-like › PK | 0.52 | 37.0 | 4.18e-01 | 80.0% | 96.2% |
| 5050857 | 4.1.1.95 ↗ | beta barrels › SH3 › SH3 › SH3 › Ribosomal_L26 | 0.52 | 34.0 | 3.47e-01 | 86.7% | 68.5% |