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LT603684.1__SCA90832.1__PF725A_0025__00025
Bact-VirLT603684.1__SCA90832.1__PF725A_0025__00025
Identity
- Accession:
- LT603684 ↗
- Kingdom:
- phage
Quality
88.6
mean pLDDT
Taxonomy
TaxID: 1921524
Cluster
View cluster (2 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 14-71
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1iipA02 | 1.10.150.160 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.95 | 65.0 | 5.55e-01 | 70.7% | 49.4% |
| 1j30A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.90 | 61.0 | 4.43e-01 | 70.7% | 29.1% |
| 4cmyA00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.85 | 63.0 | 4.41e-01 | 77.6% | 69.3% |
| 1lkoA01 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.84 | 63.0 | 4.60e-01 | 79.3% | 75.9% |
| 4lzgA01 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.83 | 63.0 | 5.24e-01 | 79.3% | 57.0% |
| 3k59A06 | 1.10.287.690 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › B family DNA polymerase, finger domain | 0.82 | 58.0 | 6.42e-01 | 87.9% | 91.5% |
| 1wkbA03 | 1.10.730.10 | Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 | 0.82 | 55.0 | 4.28e-01 | 70.7% | 34.7% |
| 6h5hA00 | 1.10.150.110 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › DNA polymerase beta, N-terminal domain-like | 0.81 | 61.0 | 5.69e-01 | 79.3% | 74.6% |
| 1d2mA03 | 6.10.140.240 | Special › Helix non-globular › Helix Hairpins › | 0.79 | 56.0 | 5.44e-01 | 75.9% | 69.7% |
| 3ceqA00 | 1.25.40.10 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain | 0.79 | 58.0 | 3.76e-01 | 93.1% | 18.4% |
| 2oi2A02 | 3.30.70.890 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GHMP kinase, C-terminal domain | 0.75 | 58.0 | 4.34e-01 | 82.8% | 39.6% |
| 5jc3A02 | 1.20.1320.30 | Mainly Alpha › Up-down Bundle › phosphoenolpyruvate carboxylase, domain 3 › | 0.74 | 64.0 | 4.86e-01 | 93.1% | 72.2% |
| 1iwpG02 | 1.10.1510.20 | Mainly Alpha › Orthogonal Bundle › Hypothetical Protein Yqey; Chain: A; domain1 › Propanediol/glycerol dehydratase, small subunit | 0.73 | 55.0 | 4.71e-01 | 94.8% | 50.5% |
| 3k85A00 | 3.30.230.120 | Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › | 0.65 | 49.0 | 3.05e-01 | 81.0% | 16.3% |
| 6umqA01 | 1.20.930.60 | Mainly Alpha › Up-down Bundle › Transcription Elongation Factor S-II; Chain A › | 0.63 | 56.0 | 4.51e-01 | 100.0% | 52.2% |
| 2qgmA03 | 1.20.1440.30 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Biosynthetic Protein domain | 0.60 | 45.0 | 3.65e-01 | 82.8% | 41.4% |
| 2wbiB03 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.60 | 45.0 | 3.42e-01 | 86.2% | 50.6% |
| 2xv4S03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 43.0 | 3.76e-01 | 82.8% | 58.7% |
| 1a59A02 | 1.10.230.10 | Mainly Alpha › Orthogonal Bundle › Cytochrome p450-Terp; domain 2 › Cytochrome P450-Terp, domain 2 | 0.56 | 41.0 | 3.32e-01 | 77.6% | 75.9% |
| 3rh9A01 | 3.40.605.10 | Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 | 0.56 | 47.0 | 3.04e-01 | 98.3% | 24.2% |
| 3cr3A00 | 1.25.40.340 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › DhaL domain | 0.54 | 44.0 | 3.22e-01 | 100.0% | 40.6% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3170329 | 604.12.1.9 ↗ | alpha bundles › Spectrin repeat-like › MIT domain › MIT domain › ATG1-like_MIT2 | 0.86 | 58.0 | 4.63e-01 | 70.7% | 38.2% |
| 55685 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.84 | 64.0 | 4.60e-01 | 79.3% | 75.3% |
| 4933300 | 601.7.1.2 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › HEPN | 0.84 | 65.0 | 5.60e-01 | 81.0% | 90.6% |
| 4956293 | 601.7.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain | 0.83 | 68.0 | 5.19e-01 | 86.2% | 45.0% |
| 4630477 | 632.18.1.2 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › hypothetical protein PA2901 › hypothetical protein PA2901 › EzrA | 0.83 | 56.0 | 5.76e-01 | 81.0% | 72.7% |
| 3584523 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.82 | 61.0 | 4.31e-01 | 77.6% | 32.5% |
| 4960328 | 150.1.1.3 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › Rubrerythrin | 0.80 | 68.0 | 4.72e-01 | 93.1% | 86.3% |
| 3987421 | 3843.1.1.0 ↗ | alpha complex topology › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K › NADH-quinone oxidoreductase subunit K | 0.79 | 63.0 | 6.09e-01 | 84.5% | 80.0% |
| 4946120 | 102.1.3.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain | 0.75 | 60.0 | 4.61e-01 | 86.2% | 41.6% |
| 3495803 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.68 | 59.0 | 3.60e-01 | 100.0% | 32.7% |
| 1556804 | 633.24.1.1 ↗ | alpha bundles › Bromodomain-like › RABEX-5 helical domain › RABEX-5 helical domain › VPS9 | 0.65 | 48.0 | 3.51e-01 | 81.0% | 55.2% |
| 3307050 | 3997.1.1.1 ↗ | alpha arrays › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › Helical insertion domain in magnesium chelatase catalytic subunit › CobN-Mg_chel | 0.57 | 50.0 | 3.33e-01 | 98.3% | 44.3% |
| 4928922 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.57 | 49.0 | 2.89e-01 | 100.0% | 39.6% |