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LT960552.1__SOK58825.1__X__00017
Bact-VirLT960552.1__SOK58825.1__X__00017
Identity
- Accession:
- LT960552 ↗
- Kingdom:
- phage
Quality
69.0
mean pLDDT
Taxonomy
TaxID: 2052743
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 86-151
Domain cluster:
rep: OP292654.1__UYE98452.1__XbC2_23__00023__D89-154
D2
high
residues 175-240
Domain cluster:
rep: NC_019526.1__YP_007007430.1__F403_gp260__00275__D338-402
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1r6bX03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.72 | 62.0 | 5.75e-01 | 100.0% | 94.3% |
| 2l09A01 | 1.10.8.550 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Proto-chlorophyllide reductase 57 kD subunit B | 0.67 | 49.0 | 5.25e-01 | 87.9% | 100.0% |
| 4heoA00 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.67 | 50.0 | 5.35e-01 | 84.8% | 96.4% |
| 3k3fA00 | 1.10.3430.10 | Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains | 0.66 | 55.0 | 3.61e-01 | 100.0% | 27.4% |
| 5eowA00 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.65 | 55.0 | 3.56e-01 | 100.0% | 96.3% |
| 2ffjA01 | 1.10.8.380 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein PF01937, DUF89, domain 1 | 0.63 | 47.0 | 5.05e-01 | 83.3% | 98.2% |
| 1gakA00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.62 | 49.0 | 3.95e-01 | 89.4% | 65.7% |
| 4p17A02 | 1.10.8.270 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › putative rabgap domain of human tbc1 domain family member 14 like domains | 0.61 | 48.0 | 4.15e-01 | 90.9% | 53.6% |
| 2b3tA01 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.61 | 51.0 | 4.74e-01 | 93.9% | 78.6% |
| 2nrlA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.61 | 42.0 | 3.33e-01 | 74.2% | 77.9% |
| 2j0wA02 | 1.20.120.1320 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain | 0.61 | 46.0 | 4.20e-01 | 84.8% | 74.2% |
| 1tujA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.61 | 47.0 | 3.83e-01 | 83.3% | 55.3% |
| 3lynB00 | 1.20.150.10 | Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein | 0.60 | 46.0 | 3.95e-01 | 90.9% | 72.6% |
| 2g5gX02 | 1.10.8.760 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Haem-binding uptake, Tiki superfamily, ChaN, domain 2 | 0.59 | 42.0 | 4.40e-01 | 75.8% | 84.7% |
| 3zfiA00 | 1.10.890.40 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › | 0.59 | 48.0 | 4.38e-01 | 93.9% | 77.4% |
| 7tvyA01 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.58 | 44.0 | 3.73e-01 | 83.3% | 47.4% |
| 2wcjA00 | 1.10.238.20 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain | 0.58 | 48.0 | 3.85e-01 | 95.5% | 46.1% |
| 2wdqC00 | 1.20.1300.10 | Mainly Alpha › Up-down Bundle › 3 helical TM bundles of succinate and fumarate reductases › Fumarate reductase/succinate dehydrogenase, transmembrane subunit | 0.58 | 43.0 | 3.59e-01 | 81.8% | 84.3% |
| 1f68A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.57 | 41.0 | 3.63e-01 | 78.8% | 78.6% |
| 1aepA00 | 1.20.120.20 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Apolipoprotein | 0.56 | 43.0 | 3.36e-01 | 84.8% | 95.4% |
| 1n5uA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.54 | 42.0 | 3.93e-01 | 89.4% | 73.3% |
| 2qffA00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.53 | 39.0 | 3.88e-01 | 83.3% | 85.1% |
| 3qwlA02 | 1.10.8.680 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ypt/Rab-GAP domain of gyp1p, domain 2 | 0.53 | 39.0 | 3.79e-01 | 80.3% | 76.6% |
| 3qxlA00 | 1.10.840.10 | Mainly Alpha › Orthogonal Bundle › Son of Sevenless (SoS) protein; Chain S, domain 2 › Ras guanine-nucleotide exchange factors catalytic domain | 0.53 | 41.0 | 2.84e-01 | 86.4% | 89.4% |
| 1zhcA00 | 6.10.280.50 | Special › Helix non-globular › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 37.0 | 3.53e-01 | 72.7% | 81.6% |
| 4s3mB02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.52 | 40.0 | 3.48e-01 | 84.8% | 87.7% |
| 3msyA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.52 | 43.0 | 3.76e-01 | 100.0% | 70.3% |
| 6fakA02 | 1.10.246.10 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › | 0.51 | 41.0 | 3.93e-01 | 93.9% | 84.0% |
| 3t46A00 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.51 | 38.0 | 3.73e-01 | 84.8% | 89.3% |
| 2kuaA01 | 1.10.437.10 | Mainly Alpha › Orthogonal Bundle › Apoptosis Regulator Bcl-x › Blc2-like | 0.51 | 37.0 | 2.97e-01 | 81.8% | 62.9% |
ECOD (25)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3281755 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.70 | 55.0 | 5.67e-01 | 86.4% | 100.0% |
| 4931700 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.70 | 56.0 | 5.55e-01 | 87.9% | 91.4% |
| 5003875 | 4009.1.1.1 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom | 0.70 | 55.0 | 5.61e-01 | 86.4% | 93.8% |
| 5082367 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.69 | 54.0 | 5.51e-01 | 86.4% | 95.4% |
| 5060163 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.68 | 55.0 | 5.57e-01 | 87.9% | 93.8% |
| 5034808 | 4009.1.1.1 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › ARMT1-like_dom | 0.68 | 53.0 | 5.24e-01 | 86.4% | 90.0% |
| 4940761 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.67 | 53.0 | 5.24e-01 | 86.4% | 90.0% |
| 3996657 | 4979.2.1.1 ↗ | alpha arrays › C-terminal domain of Hypothetical protein MPN330-like › XRN2-binding domain (XTBD) › XRN2-binding domain (XTBD) › XTBD | 0.66 | 46.0 | 5.12e-01 | 90.9% | 98.0% |
| 4144086 | 166.1.1.1 ↗ | alpha superhelices › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › 1-deoxy-D-xylulose-5-phosphate reductoisomerase-C › DXPR_C | 0.65 | 55.0 | 4.89e-01 | 100.0% | 79.0% |
| 3700057 | 103.4.1.2 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › TFIIS_M | 0.64 | 55.0 | 4.95e-01 | 98.5% | 82.1% |
| 4939237 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.64 | 50.0 | 5.08e-01 | 87.9% | 89.2% |
| 5011657 | 5081.1.1.1 ↗ | alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid | 0.63 | 53.0 | 4.05e-01 | 100.0% | 93.1% |
| 4989210 | 5050.1.1.0 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter | 0.61 | 46.0 | 3.30e-01 | 83.3% | 57.6% |
| 3282988 | 601.19.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › Apolipoprotein › Apolipoprotein | 0.61 | 52.0 | 4.07e-01 | 100.0% | 89.0% |
| 3653793 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.61 | 46.0 | 4.23e-01 | 83.3% | 76.7% |
| 3247097 | 216.1.1.17 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C | 0.61 | 45.0 | 3.84e-01 | 86.4% | 47.0% |
| 3466891 | 216.1.1.17 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C | 0.60 | 46.0 | 3.72e-01 | 86.4% | 72.6% |
| 3803849 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.60 | 46.0 | 4.38e-01 | 87.9% | 90.0% |
| 3579656 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.59 | 46.0 | 4.83e-01 | 97.0% | 100.0% |
| 4239 | 5069.1.3.1 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits › Sdh_cyt | 0.58 | 43.0 | 3.53e-01 | 81.8% | 79.1% |
| 3286065 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.58 | 45.0 | 4.45e-01 | 84.8% | 94.3% |
| 3452742 | 216.1.1.17 ↗ | a+b two layers › UBC-like › UBC-like › UBC-like › Med15_C | 0.57 | 47.0 | 3.79e-01 | 93.9% | 84.4% |
| 3724962 | 5050.1.1.1 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Sugar_tr | 0.56 | 44.0 | 3.08e-01 | 87.9% | 44.8% |
| 4955871 | 102.1.3.0 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › PAP/OAS1 substrate-binding domain | 0.55 | 43.0 | 3.76e-01 | 86.4% | 74.3% |
| 3508963 | 614.1.1.1 ↗ | alpha duplicates or obligate multimers › L27 domain › L27 domain › L27 domain › L27 | 0.52 | 45.0 | 3.94e-01 | 98.5% | 92.0% |