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LT962379.1__SOO56514.1__X__00046

Bact-Vir

LT962379.1__SOO56514.1__X__00046

Identity

Accession:
LT962379 ↗
Kingdom:
phage

Quality

74.0 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Autographivirales› Autotranscriptaviridae› Helsettvirus› Yersinia_phage_fPS-53

TaxID: 2052752

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-51
PDB
Domain cluster: representative
CATH (30)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5iz3A01 3.30.540.10 Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.70 53.0 3.58e-01 100.0% 21.8%
1v5rA00 3.30.920.20 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Gas2-like domain 0.67 58.0 4.53e-01 97.8% 52.6%
1io1A02 2.170.280.10 Mainly Beta › Beta Complex › f41 fragment of flagellin, middle domain › f41 fragment of flagellin, middle domain 0.66 53.0 3.78e-01 88.9% 36.6%
2ej9A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.63 49.0 3.26e-01 86.7% 39.4%
6p2uA02 3.30.30.30 Alpha Beta › 2-Layer Sandwich › Defensin A-like › 0.62 47.0 4.60e-01 88.9% 100.0%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.60 46.0 3.51e-01 93.3% 80.6%
1e8pA00 3.90.1220.10 Alpha Beta › Alpha-Beta Complex › Endoglucanase; Chain: A › Cellulose docking domain, dockering 0.60 42.0 4.25e-01 95.6% 73.9%
2byoA00 2.50.20.20 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › 0.60 42.0 2.84e-01 75.6% 29.5%
1am7A00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.60 44.0 3.10e-01 82.2% 24.7%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 46.0 3.68e-01 91.1% 93.0%
2d5wA03 3.10.105.10 Alpha Beta › Roll › Dipeptide-binding Protein; domain 3 › Dipeptide-binding Protein; Domain 3 0.59 49.0 3.13e-01 100.0% 74.6%
1v87A01 3.30.40.10 Alpha Beta › 2-Layer Sandwich › Herpes Virus-1 › Zinc/RING finger domain, C3HC4 (zinc finger) 0.58 47.0 4.00e-01 97.8% 82.4%
4l80D00 3.20.20.60 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphoenolpyruvate-binding domains 0.58 39.0 2.32e-01 100.0% 9.0%
2basB01 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.57 48.0 3.07e-01 95.6% 23.0%
2jrbA00 3.30.250.20 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › L1 transposable element, C-terminal domain 0.57 43.0 4.01e-01 91.1% 73.8%
4inaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.57 38.0 2.54e-01 93.3% 15.7%
4f3hA00 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.57 46.0 2.97e-01 97.8% 21.1%
4b9wA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 43.0 3.45e-01 91.1% 75.9%
3r4iA02 6.10.140.960 Special › Helix non-globular › Helix Hairpins › 0.57 39.0 3.61e-01 100.0% 55.0%
2ewvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.56 42.0 3.26e-01 82.2% 36.3%
1b77A00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 39.0 2.59e-01 80.0% 39.0%
6pwkA02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.54 43.0 2.86e-01 97.8% 23.4%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 40.0 3.12e-01 88.9% 86.2%
4erdA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.54 42.0 3.27e-01 88.9% 78.7%
2vhlA02 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.53 41.0 2.58e-01 91.1% 91.0%
17gsA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 43.0 3.56e-01 100.0% 76.8%
8bs9A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 40.0 2.52e-01 84.4% 22.7%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.52 40.0 3.12e-01 95.6% 77.5%
1zx5A01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.50 44.0 2.83e-01 100.0% 31.3%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.50 35.0 2.88e-01 77.8% 75.8%
ECOD (49)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3965202 378.1.1.19 ↗ few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH_3 0.86 76.0 5.66e-01 100.0% 62.7%
3731030 241.10.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 0.71 62.0 4.49e-01 97.8% 60.8%
3752730 241.10.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 0.70 61.0 4.63e-01 97.8% 49.5%
3481690 241.10.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 0.69 57.0 4.65e-01 93.3% 77.4%
3171587 2484.1.1.1 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › HSP70 0.69 57.0 3.33e-01 100.0% 13.9%
5045347 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 47.0 2.95e-01 73.3% 13.8%
4030668 241.10.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain 0.67 57.0 5.05e-01 95.6% 72.3%
4647463 5050.1.1.14 ↗ alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › ATG22 0.67 55.0 3.36e-01 95.6% 20.0%
3393461 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.66 52.0 3.78e-01 88.9% 74.4%
3260781 241.10.1.1 ↗ a+b two layers › Type III secretory system chaperone-like › GAS2 domain › GAS2 domain › GAS2 0.65 53.0 4.59e-01 91.1% 68.6%
4945225 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 44.0 2.92e-01 71.1% 16.1%
4945130 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.65 44.0 2.87e-01 71.1% 15.3%
3420717 2004.1.1.51 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_1 0.65 47.0 3.36e-01 95.6% 23.7%
4886706 632.7.1.1 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 0.65 53.0 3.66e-01 100.0% 31.7%
5047148 2004.1.1.198 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23 0.64 50.0 2.99e-01 86.7% 35.8%
5049716 2003.1.5.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.64 48.0 3.01e-01 93.3% 14.3%
5066058 7571.1.1.1 ↗ a/b three-layered sandwiches › Formyltransferase › Formyltransferase › Formyltransferase › Formyl_trans_N 0.63 42.0 2.75e-01 73.3% 32.3%
3616247 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 49.0 3.81e-01 86.7% 51.0%
3217266 11.1.1.532 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C6 0.61 51.0 4.32e-01 93.3% 60.0%
5066799 2.6.1.1 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease › SNase 0.60 46.0 3.64e-01 91.1% 88.0%
5041793 2003.1.10.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain 0.60 45.0 3.67e-01 84.4% 67.8%
3276253 388.1.1.0 ↗ few secondary structure elements › Huristasin-like › Huristasin-like › Huristasin-like 0.59 46.0 4.64e-01 86.7% 93.3%
3763758 2.6.1.0 ↗ beta barrels › OB-fold › Staphylococcal nuclease › Staphylococcal nuclease 0.59 46.0 3.59e-01 91.1% 72.7%
3218678 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.59 42.0 3.89e-01 95.6% 56.9%
1547077 7523.1.1.3 ↗ a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › SBP_bac_5 0.59 49.0 3.13e-01 100.0% 55.3%
5032886 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.58 44.0 2.48e-01 86.7% 72.2%
3191150 59.1.1.5 ↗ beta complex topology › triple barrel › triple barrel › Rap30/74 interaction domains-like › Dcc1 0.58 46.0 3.49e-01 86.7% 85.0%
3738632 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.57 49.0 2.92e-01 100.0% 14.5%
5013701 3572.1.1.2 ↗ a+b complex topology › Cascade subunit Csa5 › Cascade subunit Csa5 › Cascade subunit Csa5 › Cas_Csa5 0.57 50.0 3.81e-01 100.0% 81.0%
4187442 375.1.1.76 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-RRN7 0.55 37.0 4.05e-01 71.1% 88.6%
4253460 321.1.1.7 ↗ a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › GCS2 0.55 44.0 2.70e-01 100.0% 42.9%
3818934 2004.1.1.51 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Sulfotransfer_1 0.55 42.0 2.74e-01 100.0% 16.0%
4882125 4952.1.1.2 ↗ alpha arrays › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › L-aspartase N-terminal domain-like › Lyase_aromatic 0.53 41.0 2.78e-01 93.3% 30.7%
3611163 2004.1.1.480 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N, AAA_21, AAA_29 0.53 40.0 2.38e-01 88.9% 41.6%
3285378 220.1.1.221 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › DUF3093 0.53 43.0 3.33e-01 91.1% 81.0%
None — 0.53 38.0 2.47e-01 93.3% 15.1%
3445173 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.53 38.0 3.43e-01 77.8% 55.4%
5038496 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.53 37.0 3.91e-01 80.0% 87.5%
4278911 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.52 39.0 3.88e-01 86.7% 84.0%
3602713 101.1.2.819 ↗ alpha arrays › HTH › HTH › winged helix domain › PF27231 0.52 35.0 2.60e-01 73.3% 94.5%
3785872 2.1.1.224 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 0.52 43.0 3.03e-01 93.3% 62.1%
2392267 2004.1.1.55 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › RNA_helicase 0.51 38.0 2.71e-01 97.8% 90.0%
4112791 4.8.1.5 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.51 39.0 3.79e-01 86.7% 84.0%
3880852 386.1.1.18 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2_jaz 0.51 34.0 3.42e-01 80.0% 68.9%
3722890 59.1.2.1 ↗ beta complex topology › triple barrel › triple barrel › RNase H2 subunits B and C › RNase_H2_suC 0.51 36.0 2.77e-01 82.2% 78.3%
3523516 5063.1.1.11 ↗ alpha bundles › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › Photosystem I reaction center subunit X, PsaK › TSTD2_N 0.51 39.0 3.52e-01 93.3% 60.0%
4284103 207.2.1.33 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Pectin lyase-like › Pectin lyase-like › Pel9A-like_beta_helix 0.51 37.0 2.16e-01 95.6% 8.5%
4355853 208.1.1.4 ↗ beta duplicates or obligate multimers › Single-stranded left-handed beta-helix › Trimeric LpxA-like enzymes › Trimeric LpxA-like enzymes › Hexapep,Hexapep_2 0.50 36.0 2.51e-01 84.4% 32.6%
4567919 2.1.1.224 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › PF29084 0.50 42.0 3.20e-01 95.6% 70.0%