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LT992259.1__SPL81299.1__X__00008
Bact-VirLT992259.1__SPL81299.1__X__00008
Identity
- Accession:
- LT992259 ↗
- Kingdom:
- phage
Quality
82.6
mean pLDDT
Cluster
View cluster (116 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 19-91
Domain cluster:
rep: OP172633.1__WAX05116.1__AB434P2_00043__00038__D17-94
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF23982.3 best | XM1_gp53_minor_capsid | 29.3 | 9.50e-07 | 95.9% | 37.7% |
CATH (10)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.75 | 59.0 | 5.39e-01 | 91.8% | 65.6% |
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.74 | 59.0 | 5.45e-01 | 97.3% | 66.3% |
| 3gqhA01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.62 | 54.0 | 4.46e-01 | 93.2% | 56.9% |
| 1uz5A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.61 | 51.0 | 5.15e-01 | 93.2% | 97.2% |
| 1g8lA04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.59 | 48.0 | 4.81e-01 | 89.0% | 100.0% |
| 1wu2A04 | 2.40.340.10 | Mainly Beta › Beta Barrel › Beta-clip › MoeA, C-terminal, domain IV | 0.58 | 49.0 | 4.88e-01 | 97.3% | 98.7% |
| 3soeA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.56 | 46.0 | 4.23e-01 | 94.5% | 82.2% |
| 1rgwA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.54 | 43.0 | 4.19e-01 | 93.2% | 97.6% |
| 1p1dA02 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.52 | 42.0 | 4.00e-01 | 95.9% | 94.7% |
| 2e7kA00 | 2.30.42.10 | Mainly Beta › Roll › Pdz3 Domain › PDZ domain | 0.51 | 41.0 | 3.91e-01 | 95.9% | 90.1% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3981037 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.79 | 57.0 | 6.44e-01 | 90.4% | 100.0% |
| 2559744 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.76 | 53.0 | 5.80e-01 | 91.8% | 89.8% |
| 5083172 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.75 | 52.0 | 5.93e-01 | 83.6% | 100.0% |
| 5002644 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.74 | 62.0 | 6.16e-01 | 90.4% | 96.0% |
| 2808420 | 70.4.1.1 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › HDPD | 0.70 | 59.0 | 5.15e-01 | 100.0% | 61.5% |
| 5039270 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.68 | 46.0 | 5.14e-01 | 89.0% | 94.5% |
| 5083817 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.65 | 53.0 | 5.58e-01 | 89.0% | 100.0% |
| 4990371 | 70.1.1.0 ↗ | beta barrels › beta-clip › MoeA C-terminal domain-like › MoeA C-terminal domain-like | 0.58 | 48.0 | 4.91e-01 | 91.8% | 98.6% |
| 3829882 | 1.1.8.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › Beta-barrel_CAF17_C | 0.55 | 38.0 | 3.52e-01 | 94.5% | 55.8% |
D2
high
residues 95-145
Domain cluster:
representative
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1c5eA00 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.78 | 70.0 | 5.67e-01 | 100.0% | 57.9% |
| 6xgqb01 | 2.40.300.10 | Mainly Beta › Beta Barrel › Virus Head Decoration Protein; Chain: A, › Head decoration protein D | 0.77 | 70.0 | 5.66e-01 | 100.0% | 61.3% |
| 6tdyD01 | 2.40.10.170 | Mainly Beta › Beta Barrel › Thrombin, subunit H › | 0.64 | 49.0 | 4.36e-01 | 100.0% | 57.3% |
| 2diqA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.58 | 42.0 | 3.42e-01 | 92.2% | 40.0% |
| 2l89A00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 37.0 | 3.06e-01 | 72.5% | 75.9% |
| 1ng2A01 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.55 | 40.0 | 4.29e-01 | 78.4% | 95.5% |
| 1h3zA00 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 37.0 | 3.03e-01 | 70.6% | 77.8% |
| 2gfaB01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.55 | 40.0 | 3.78e-01 | 88.2% | 66.1% |
| 7cfdA01 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 39.0 | 3.49e-01 | 92.2% | 53.4% |
| 4oj5B01 | 3.30.2020.50 | Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › | 0.54 | 43.0 | 3.71e-01 | 90.2% | 69.5% |
| 2aujD01 | 2.40.50.100 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.54 | 42.0 | 4.05e-01 | 100.0% | 75.0% |
| 3q5zA02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.52 | 39.0 | 3.05e-01 | 88.2% | 36.4% |
| 3ntkA02 | 2.30.30.140 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 38.0 | 3.34e-01 | 80.4% | 80.0% |
ECOD (13)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3602932 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.79 | 67.0 | 6.82e-01 | 98.0% | 98.0% |
| 5083172 | 70.4.1.9 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_cement_2 | 0.76 | 62.0 | 6.18e-01 | 92.2% | 96.2% |
| 2559744 | 70.4.1.2 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) › Phage_head_fibr | 0.73 | 63.0 | 6.05e-01 | 100.0% | 83.1% |
| 5002644 | 70.4.1.0 ↗ | beta barrels › beta-clip › Head decoration protein D (gpD, major capsid protein D) › Head decoration protein D (gpD, major capsid protein D) | 0.73 | 63.0 | 5.61e-01 | 100.0% | 92.0% |
| 3333322 | 4.1.1.42 ↗ | beta barrels › SH3 › SH3 › SH3 › Agenet | 0.69 | 46.0 | 3.38e-01 | 88.2% | 26.7% |
| 3510526 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.63 | 41.0 | 4.05e-01 | 86.3% | 61.8% |
| 3642328 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.62 | 53.0 | 5.24e-01 | 98.0% | 96.4% |
| 3391558 | 4.1.1.9 ↗ | beta barrels › SH3 › SH3 › SH3 › TUDOR | 0.61 | 42.0 | 3.65e-01 | 92.2% | 46.3% |
| 3707347 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.60 | 41.0 | 4.02e-01 | 88.2% | 65.5% |
| 4196229 | 4.1.1.58 ↗ | beta barrels › SH3 › SH3 › SH3 › SH3_3 | 0.56 | 40.0 | 3.69e-01 | 78.4% | 68.6% |
| 4026153 | 376.1.1.0 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box | 0.55 | 38.0 | 3.56e-01 | 72.5% | 87.7% |
| 5041389 | 4224.1.1.1 ↗ | few secondary structure elements › CHY zinc finger › CHY zinc finger › CHY zinc finger › zf-CHY | 0.54 | 46.0 | 3.82e-01 | 100.0% | 74.7% |
| 5032809 | 4.11.1.0 ↗ | beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase | 0.53 | 40.0 | 3.08e-01 | 92.2% | 33.8% |