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LT992259.1__SPL81333.1__X__00042

Bact-Vir

LT992259.1__SPL81333.1__X__00042

Identity

Accession:
LT992259 ↗
Kingdom:
phage

Quality

90.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yersinia_phage_fEV-1

TaxID: 2077277

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 4-95
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vkdA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 52.0 3.57e-01 94.6% 79.4%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.60 35.0 3.29e-01 88.0% 46.9%
2ffsA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.60 44.0 3.84e-01 79.3% 62.8%
2imjD01 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 49.0 4.26e-01 94.6% 91.5%
1p32B00 3.10.280.10 Alpha Beta › Roll › Mitochondrial Matrix Protein; Chain A › Mitochondrial glycoprotein 0.58 48.0 4.01e-01 94.6% 62.6%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 32.0 4.10e-01 87.0% 100.0%
3oe3C00 2.40.128.200 Mainly Beta › Beta Barrel › Lipocalin › C-type lysozyme inhibitor 0.57 41.0 4.25e-01 88.0% 78.4%
7c38B01 2.120.10.70 Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin 0.56 47.0 3.34e-01 95.7% 92.4%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 34.0 4.07e-01 94.6% 100.0%
4h0pA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.56 44.0 3.47e-01 87.0% 94.1%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.54 37.0 4.15e-01 93.5% 97.0%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.53 39.0 3.32e-01 76.1% 85.1%
2zxkA00 3.40.1500.20 Alpha Beta › 3-Layer(aba) Sandwich › oxygen-dependent coproporphyrinogen oxidase › 0.53 44.0 3.26e-01 94.6% 98.9%
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.53 39.0 3.09e-01 79.3% 77.9%
4ca1B02 2.60.210.10 Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 0.53 41.0 3.73e-01 87.0% 93.9%
6gszA05 2.60.420.10 Mainly Beta › Sandwich › Maltose phosphorylase, domain 3 › Maltose phosphorylase, domain 3 0.53 35.0 3.68e-01 89.1% 76.8%
2m7oA00 3.10.450.400 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Uncharacterised protein PF15513, DUF4651 0.51 35.0 3.82e-01 73.9% 91.4%
4ok4A02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.51 42.0 2.93e-01 93.5% 94.5%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.51 36.0 3.32e-01 73.9% 68.0%
3jcuO01 2.40.160.30 Mainly Beta › Beta Barrel › Porin › Photosystem II, cytochrome c-550 precursor 0.50 44.0 3.61e-01 97.8% 79.5%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 36.0 3.35e-01 77.2% 97.6%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4181736 4041.1.1.0 ↗ a+b complex topology › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase › insertion domain in beta subunit of DNA dependent RNA-polymerase 0.64 51.0 4.19e-01 84.8% 98.2%
3649104 844.1.1.5 ↗ beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 0.61 45.0 3.37e-01 80.4% 98.4%
3831169 5.1.5.66 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_1 0.60 48.0 3.40e-01 84.8% 43.3%
3463667 5.1.3.144 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.60 50.0 3.40e-01 90.2% 47.6%
3926676 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 45.0 3.88e-01 81.5% 82.7%
4031999 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.56 37.0 3.85e-01 77.2% 74.1%
3930641 214.1.1.0 ↗ a+b two layers › SH2 › SH2 › SH2 0.55 46.0 4.44e-01 92.4% 86.7%
3934183 214.1.1.9 ↗ a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.55 46.0 4.40e-01 92.4% 88.6%
3928322 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.55 46.0 4.43e-01 92.4% 88.6%
4579655 5.1.4.38 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › ANAPC1 0.54 42.0 2.79e-01 84.8% 34.3%
4307607 331.3.1.0 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.53 39.0 2.96e-01 78.3% 83.3%
3587129 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.53 36.0 4.12e-01 75.0% 100.0%
3806681 5.1.5.96 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › FBA_3 0.52 41.0 3.01e-01 89.1% 89.1%
3933294 214.1.1.1 ↗ a+b two layers › SH2 › SH2 › SH2 › SH2 0.51 43.0 4.14e-01 92.4% 83.8%
4683341 2484.1.1.12 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Acetate_kinase 0.51 40.0 3.24e-01 88.0% 91.0%