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LT992259.1__SPL81338.1__X__00047
Bact-VirLT992259.1__SPL81338.1__X__00047
Identity
- Accession:
- LT992259 ↗
- Kingdom:
- phage
Quality
89.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 133-184
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1u3eM02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.71 | 63.0 | 5.77e-01 | 100.0% | 77.9% |
| 1m2oA05 | 3.40.20.10 | Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin | 0.68 | 43.0 | 3.43e-01 | 100.0% | 31.4% |
| 3fw6A01 | 2.60.40.1180 | Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II | 0.61 | 44.0 | 3.38e-01 | 100.0% | 34.2% |
| 1iyjB03 | 2.40.50.140 | Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins | 0.59 | 39.0 | 2.94e-01 | 100.0% | 25.4% |
| 5owvD01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.59 | 43.0 | 2.86e-01 | 100.0% | 18.9% |
| 2cyjA00 | 3.40.1230.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like | 0.56 | 46.0 | 3.65e-01 | 96.2% | 83.8% |
| 3fsyB01 | 3.30.70.2010 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.55 | 43.0 | 3.41e-01 | 84.6% | 93.5% |
| 2dk6A01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.55 | 44.0 | 3.83e-01 | 100.0% | 76.6% |
| 1ihnA00 | 3.40.1230.10 | Alpha Beta › 3-Layer(aba) Sandwich › Hypothetical Protein Mth938; Chain: A, › MTH938-like | 0.54 | 44.0 | 3.60e-01 | 96.2% | 81.4% |
| 1kt8A01 | 3.30.470.10 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › Aminotransferase class 4, branched-chain amino acid transferase, N-terminal domain | 0.54 | 45.0 | 3.17e-01 | 100.0% | 69.1% |
| 2fb7A00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 47.0 | 4.12e-01 | 100.0% | 88.7% |
| 2f4nB02 | 2.40.30.90 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacterial fluorinating enzyme like | 0.53 | 46.0 | 3.80e-01 | 98.1% | 69.1% |
| 4b7lA03 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.52 | 41.0 | 3.35e-01 | 86.5% | 69.0% |
| 4mamB03 | 3.30.470.20 | Alpha Beta › 2-Layer Sandwich › D-amino Acid Aminotransferase; Chain A, domain 1 › ATP-grasp fold, B domain | 0.52 | 42.0 | 3.05e-01 | 100.0% | 52.1% |
| 7sz2A01 | 3.30.720.50 | Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › | 0.52 | 41.0 | 3.62e-01 | 100.0% | 84.8% |
| 1wmhA00 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.51 | 37.0 | 3.40e-01 | 88.5% | 96.4% |
| 2qlzA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.50 | 36.0 | 3.51e-01 | 90.4% | 68.3% |
| 2bkfA01 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.50 | 37.0 | 3.40e-01 | 90.4% | 95.2% |
| 6rptC00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.50 | 41.0 | 3.19e-01 | 100.0% | 42.0% |
| 4lrzE02 | 3.30.450.20 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain | 0.50 | 43.0 | 3.62e-01 | 100.0% | 98.9% |
| 2fhqA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.50 | 42.0 | 3.20e-01 | 100.0% | 39.3% |
ECOD (30)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3241915 | 325.1.1.0 ↗ | a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › CO dehydrogenase molybdoprotein N-domain-like | 0.69 | 48.0 | 2.78e-01 | 100.0% | 8.8% |
| 3225783 | 217.1.1.1 ↗ | a+b complex topology › FAD-binding domain-like › FAD-binding domain › FAD-binding domain › FAD_binding_5 | 0.68 | 47.0 | 3.12e-01 | 100.0% | 18.1% |
| 3618240 | 382.1.1.0 ↗ | few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like | 0.67 | 58.0 | 4.72e-01 | 100.0% | 73.0% |
| 3838661 | 223.1.1.0 ↗ | a+b three layers › Profilin-like › sensor domains › sensor domains | 0.65 | 45.0 | 3.82e-01 | 75.0% | 57.8% |
| 3992794 | 2484.1.1.2 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Actin | 0.62 | 51.0 | 3.34e-01 | 100.0% | 32.6% |
| 3805842 | 304.112.1.3 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › ArgoN | 0.62 | 53.0 | 4.59e-01 | 100.0% | 91.8% |
| 3685089 | 304.112.1.0 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain | 0.61 | 53.0 | 4.42e-01 | 100.0% | 90.5% |
| 3640834 | 245.1.1.0 ↗ | a+b two layers › Ribonuclease PH domain 2-like › Ribonuclease PH domain 2 › Ribonuclease PH domain 2 | 0.61 | 39.0 | 3.07e-01 | 100.0% | 28.3% |
| 3834301 | 304.112.1.3 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › ArgoN | 0.61 | 52.0 | 4.30e-01 | 100.0% | 93.0% |
| 3385871 | 872.8.1.0 ↗ | a+b two layers › Dodecin subunit-like › Probable RNA-binding protein N-terminal domain › Probable RNA-binding protein N-terminal domain | 0.61 | 44.0 | 3.03e-01 | 100.0% | 22.2% |
| 3430971 | 304.112.1.3 ↗ | a+b two layers › Alpha-beta plaits › Argonaute, N-terminal domain › Argonaute, N-terminal domain › ArgoN | 0.61 | 52.0 | 4.12e-01 | 100.0% | 69.6% |
| 3729515 | 4020.1.1.0 ↗ | a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes | 0.58 | 50.0 | 3.53e-01 | 100.0% | 77.5% |
| 3896089 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.58 | 46.0 | 3.97e-01 | 90.4% | 94.1% |
| 3959955 | 304.163.1.3 ↗ | a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain › PF31118 | 0.58 | 43.0 | 4.53e-01 | 100.0% | 95.6% |
| 10522 | 7538.1.1.1 ↗ | a/b three-layered sandwiches › Hypothetical protein MT938 (MTH938) › Hypothetical protein MT938 (MTH938) › Hypothetical protein MT938 (MTH938) › DUF498 | 0.56 | 46.0 | 3.64e-01 | 96.2% | 83.1% |
| 3606454 | 4357.1.1.0 ↗ | beta barrels › WWE domain › WWE domain › WWE domain | 0.55 | 46.0 | 4.33e-01 | 98.1% | 100.0% |
| 5064213 | 314.1.1.2 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › tRNA-synt_2b | 0.55 | 44.0 | 2.78e-01 | 96.2% | 76.4% |
| 3746817 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.55 | 46.0 | 4.15e-01 | 100.0% | 94.7% |
| 3227541 | 10.4.1.9 ↗ | beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain › CUB_2 | 0.54 | 42.0 | 3.39e-01 | 100.0% | 42.9% |
| 3404008 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.54 | 48.0 | 3.99e-01 | 100.0% | 74.4% |
| 3737483 | 220.1.1.70 ↗ | beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_5 | 0.54 | 43.0 | 3.22e-01 | 100.0% | 69.4% |
| 3403290 | 7579.1.1.2 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase | 0.54 | 46.0 | 2.84e-01 | 100.0% | 22.8% |
| 3699877 | 304.9.1.0 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD | 0.53 | 46.0 | 3.84e-01 | 100.0% | 74.7% |
| 4156870 | 221.1.1.4 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PB1 | 0.53 | 39.0 | 3.44e-01 | 90.4% | 85.3% |
| 3203053 | 11.1.5.94 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Common fold of diphtheria toxin/transcription factors/cytochrome f › Gpi16 | 0.52 | 46.0 | 3.19e-01 | 100.0% | 32.9% |
| 4946668 | 4020.1.1.1 ↗ | a+b two layers › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › a+b domain in D-aminoacid aminotransferase-like PLP-dependent enzymes › Aminotran_4 | 0.52 | 43.0 | 3.17e-01 | 100.0% | 81.2% |
| 3216088 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.52 | 44.0 | 3.81e-01 | 100.0% | 91.8% |
| 3581513 | 4357.1.1.1 ↗ | beta barrels › WWE domain › WWE domain › WWE domain › WWE | 0.51 | 41.0 | 3.72e-01 | 100.0% | 85.0% |
| 5082591 | 314.1.1.0 ↗ | a+b three layers › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases › Class II aaRS and biotin synthetases | 0.51 | 40.0 | 2.54e-01 | 96.2% | 74.1% |
| 3506020 | 11.1.1.12 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Filamin | 0.50 | 45.0 | 3.53e-01 | 100.0% | 57.1% |
D2
medium
residues 1-80
Domain cluster:
representative