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LT992259.1__SPL81340.1__X__00049

Bact-Vir

LT992259.1__SPL81340.1__X__00049

Identity

Accession:
LT992259 ↗
Kingdom:
phage

Quality

80.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Yersinia_phage_fEV-1

TaxID: 2077277

Cluster

View cluster (69 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-149
PDB
Domain cluster: rep: HQ332139.1__AGF91556.1__PRRG_00047__00045__D4-148
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10991.16 best Enc34_ssDNA-bd 89.6 2.60e-25 98.0% 79.4%
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jg2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.89 85.0 7.81e-01 100.0% 82.2%
1je5A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.82 78.0 7.18e-01 100.0% 92.3%
3mxnB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 38.0 4.06e-01 100.0% 55.7%
2zxrA01 2.40.50.460 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.70 36.0 3.51e-01 98.6% 44.9%
3kojB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 40.0 4.98e-01 97.3% 93.3%
4damC00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 41.0 4.88e-01 100.0% 95.0%
4jbmB01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 36.0 4.35e-01 100.0% 86.5%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.62 37.0 4.43e-01 93.2% 88.5%
2hqlA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 37.0 4.53e-01 97.3% 97.8%
2i46A00 2.40.50.960 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 43.0 4.30e-01 100.0% 71.1%
3nwsA01 2.40.50.800 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 45.0 4.63e-01 100.0% 81.6%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.59 35.0 4.39e-01 99.3% 97.8%
1fguB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 38.0 4.15e-01 100.0% 78.2%
1e7uA04 3.30.1010.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 4 0.56 31.0 3.08e-01 91.9% 49.4%
1k8kD01 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.52 36.0 3.62e-01 79.1% 68.2%
1b24A01 3.10.28.10 Alpha Beta › Roll › Endonuclease I-creI › Homing endonucleases 0.51 33.0 3.92e-01 70.9% 98.9%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
235847 2.1.1.53 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Enc34_ssDNA-bd 0.89 85.0 8.03e-01 100.0% 87.9%
2132736 2.1.1.53 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Enc34_ssDNA-bd 0.87 83.0 7.70e-01 100.0% 81.6%
379 2.1.1.108 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SBB_T7 0.82 78.0 7.18e-01 100.0% 92.3%
4964990 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.77 40.0 5.06e-01 98.6% 83.3%
5007515 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 44.0 4.04e-01 99.3% 45.9%
3644737 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 69.0 6.21e-01 100.0% 80.0%
3208585 2.1.1.59 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1 0.74 43.0 5.10e-01 98.6% 84.0%
3963927 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.74 42.0 4.83e-01 98.6% 75.5%
3380367 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 68.0 6.16e-01 98.6% 79.5%
4377694 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.74 45.0 5.60e-01 97.3% 98.9%
5066724 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.70 40.0 4.74e-01 100.0% 80.0%
4031715 2.1.1.85 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecJ_OB 0.67 37.0 4.23e-01 98.0% 70.9%
3488538 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.65 40.0 4.27e-01 99.3% 70.0%
164228 2.1.1.54 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3217 0.64 40.0 4.69e-01 99.3% 88.5%
4047115 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.63 42.0 4.95e-01 98.6% 98.0%
3407895 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.62 43.0 4.42e-01 99.3% 74.3%
3921372 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 40.0 4.37e-01 99.3% 80.0%
4021623 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 43.0 4.39e-01 99.3% 73.1%
4216224 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.60 43.0 4.22e-01 99.3% 68.1%
3741431 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.59 42.0 4.25e-01 99.3% 72.0%
4029921 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.56 42.0 4.16e-01 99.3% 72.5%
3174302 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.55 43.0 4.16e-01 99.3% 72.1%
3585962 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.55 43.0 4.21e-01 99.3% 74.4%
3645341 2.1.1.76 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › REPA_OB_2 0.55 39.0 3.83e-01 98.6% 66.1%
5028135 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.55 35.0 3.84e-01 98.6% 80.0%
3959123 2.1.1.17 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › OB_aCoA_assoc 0.54 32.0 3.67e-01 95.9% 79.0%
3418440 2.1.1.42 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_C 0.53 43.0 4.25e-01 99.3% 78.8%
1211839 242.1.1.7 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases › LAGLIDADG_3 0.52 32.0 3.83e-01 97.3% 93.8%
3496257 206.1.1.1 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.51 39.0 2.52e-01 81.1% 26.5%