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LacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00024
Bact-VirLacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00024
Identity
- Kingdom:
- phage
Quality
88.0
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-72
Domain cluster:
representative
CATH (7)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5i41B00 | 1.10.1660.10 | Mainly Alpha › Orthogonal Bundle › Multidrug-efflux Transporter Regulator; Chain: A; Domain 2 › | 0.60 | 42.0 | 4.33e-01 | 75.7% | 98.5% |
| 8be0A01 | 3.40.91.90 | Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain | 0.60 | 50.0 | 3.77e-01 | 98.6% | 81.7% |
| 7r0kA02 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.58 | 39.0 | 2.98e-01 | 70.0% | 33.7% |
| 4d0nB01 | 1.20.900.10 | Mainly Alpha › Up-down Bundle › Dbl Homology Domain; Chain A › Dbl homology (DH) domain | 0.56 | 44.0 | 3.11e-01 | 90.0% | 84.1% |
| 8a6tB01 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.54 | 37.0 | 3.04e-01 | 72.9% | 66.4% |
| 1xjuA00 | 1.10.530.40 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.51 | 41.0 | 3.36e-01 | 98.6% | 85.9% |
| 3rq4A02 | 2.170.270.10 | Mainly Beta › Beta Complex › Beta-clip-like › SET domain | 0.50 | 38.0 | 3.12e-01 | 92.9% | 41.5% |
ECOD (7)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3269936 | 376.1.6.1 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › IBR domain › IBR | 0.58 | 37.0 | 3.78e-01 | 97.1% | 65.7% |
| 1447874 | 148.1.3.33 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › DYNC2H1_AAA_dom | 0.57 | 46.0 | 3.85e-01 | 92.9% | 82.0% |
| 4011546 | 145.1.1.0 ↗ | alpha arrays › F-box domain › F-box domain › F-box domain | 0.53 | 44.0 | 3.54e-01 | 95.7% | 60.0% |
| 3710958 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.53 | 39.0 | 3.57e-01 | 80.0% | 97.9% |
| 3687784 | 101.1.2.132 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF3591 | 0.51 | 29.0 | 2.78e-01 | 78.6% | 45.0% |
| 7422 | 235.1.1.6 ↗ | a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › Phage_lysozyme | 0.51 | 41.0 | 3.36e-01 | 98.6% | 85.9% |
| 3885493 | 3939.1.1.0 ↗ | alpha duplicates or obligate multimers › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain › XRCC4 C-terminal oligomerization domain | 0.50 | 31.0 | 3.56e-01 | 87.1% | 88.0% |