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LacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00034

Bact-Vir

LacPavin_0818_WC40_scaffold_120392_prodigal-single.1__X__X__00034

Identity

Kingdom:
phage

Quality

81.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 13-88
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2ymsB00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.68 51.0 5.19e-01 97.4% 79.7%
1yr2A02 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.68 51.0 3.36e-01 80.3% 39.3%
1pbyB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.68 50.0 3.23e-01 77.6% 42.4%
2xzhA00 2.130.10.110 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Clathrin heavy-chain terminal domain 0.66 49.0 3.10e-01 77.6% 25.7%
2ynoA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.64 54.0 3.51e-01 89.5% 33.3%
4cc9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 52.0 3.42e-01 88.2% 31.9%
4u7aA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 57.0 3.67e-01 100.0% 36.0%
4nsxA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.63 53.0 3.40e-01 89.5% 29.9%
5tf2A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 52.0 3.35e-01 89.5% 32.5%
6fcvB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 52.0 3.36e-01 93.4% 52.1%
1u2kA02 1.10.420.10 Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 2 › Peroxidase, domain 2 0.61 39.0 3.24e-01 75.0% 38.3%
4czxA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 50.0 3.26e-01 89.5% 30.9%
2kr0A01 2.30.29.70 Mainly Beta › Roll › PH-domain like › Proteasomal ubiquitin receptor Rpn13/ADRM1 0.60 51.0 4.49e-01 93.4% 95.6%
4lg9A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 49.0 3.20e-01 89.5% 30.9%
4j0wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.60 55.0 3.55e-01 100.0% 27.2%
5c2vB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 54.0 3.46e-01 100.0% 25.9%
4ci8A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 55.0 3.52e-01 100.0% 39.8%
2ozgA03 3.30.1050.10 Alpha Beta › 2-Layer Sandwich › Nonspecific Lipid-transfer Protein; Chain A › SCP2 sterol-binding domain 0.59 37.0 3.43e-01 90.8% 51.1%
6az1g01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 54.0 3.58e-01 100.0% 31.0%
1gxrA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.59 54.0 3.47e-01 100.0% 26.3%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 35.0 3.96e-01 89.5% 80.4%
2pm9A01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 52.0 3.41e-01 100.0% 32.1%
5xyig01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 53.0 3.50e-01 100.0% 31.0%
4zovB00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 52.0 3.32e-01 100.0% 25.7%
1shyB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 41.0 2.63e-01 77.6% 40.4%
1vyhC01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 51.0 3.42e-01 100.0% 33.6%
4p04A01 2.60.40.3100 Mainly Beta › Sandwich › Immunoglobulin-like › Arylsulphate sulphotransferase monomer, N-terminal domain 0.57 47.0 4.25e-01 92.1% 92.5%
2ymsA00 2.40.128.630 Mainly Beta › Beta Barrel › Lipocalin › 0.57 52.0 4.37e-01 100.0% 70.2%
4wj7D00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 49.0 4.14e-01 94.7% 99.2%
3jb9K01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 50.0 3.36e-01 100.0% 32.9%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 47.0 4.44e-01 93.4% 91.4%
8hmcA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.55 50.0 3.29e-01 100.0% 29.1%
1h10A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 46.0 3.98e-01 92.1% 87.2%
2cy5A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 45.0 3.82e-01 93.4% 96.1%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.53 45.0 4.11e-01 96.1% 80.8%
2e9wB05 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 40.0 3.81e-01 82.9% 98.9%
2pn2A00 3.30.300.20 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › K homology (KH) domain 0.52 36.0 3.08e-01 73.7% 88.3%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.52 43.0 3.74e-01 96.1% 70.6%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 42.0 3.85e-01 94.7% 82.1%
1epwA04 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.51 43.0 3.32e-01 100.0% 98.4%
4q0yA00 2.60.40.4400 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 38.0 3.19e-01 100.0% 47.3%
5kolD00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.50 43.0 3.39e-01 100.0% 87.2%
ECOD (70)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3847019 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.83 58.0 3.66e-01 72.4% 35.6%
3629857 5.1.4.4 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,DUF1899,WD40_4 0.78 56.0 3.40e-01 75.0% 30.2%
3484051 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.77 55.0 3.48e-01 75.0% 49.7%
3793797 5.1.5.93 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.76 54.0 3.49e-01 73.7% 37.5%
3789628 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.75 53.0 3.40e-01 73.7% 35.3%
3692266 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.75 54.0 3.40e-01 75.0% 31.6%
3888294 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.75 57.0 3.70e-01 80.3% 36.6%
3627486 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.75 54.0 3.33e-01 75.0% 31.2%
3210247 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.75 53.0 3.37e-01 75.0% 31.6%
4048802 5.1.4.369 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N 0.74 56.0 3.11e-01 78.9% 15.1%
3253837 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.74 54.0 3.43e-01 76.3% 41.8%
3743943 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.72 53.0 3.25e-01 77.6% 40.9%
3256626 5.1.4.369 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N 0.68 52.0 2.90e-01 80.3% 20.7%
4018397 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.67 56.0 3.53e-01 89.5% 29.7%
4600226 5.1.4.307 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF29630 0.67 56.0 3.40e-01 89.5% 41.3%
3680499 5.1.4.369 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › EMC1_C, Beta-prop_EMC1_N 0.66 54.0 3.03e-01 88.2% 11.8%
3490407 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.65 54.0 3.38e-01 89.5% 38.5%
3595133 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 54.0 3.44e-01 89.5% 35.1%
4940077 5.1.5.11 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › PQQ_2 0.64 54.0 3.36e-01 89.5% 27.9%
3601112 844.1.1.0 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain 0.64 52.0 3.63e-01 89.5% 85.3%
3601043 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.64 53.0 3.21e-01 88.2% 23.2%
3921178 5.1.4.272 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EML_2 0.64 55.0 3.58e-01 94.7% 33.5%
3250522 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.64 53.0 3.02e-01 89.5% 17.4%
3904397 5.1.4.162 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD_LRWD1 0.64 53.0 3.31e-01 89.5% 30.5%
4021971 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.63 51.0 3.70e-01 88.2% 51.0%
3718642 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.62 56.0 3.40e-01 100.0% 21.6%
3924872 5.1.4.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.62 57.0 3.92e-01 100.0% 60.0%
3783070 5.1.4.119 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rav1p_C 0.62 48.0 3.11e-01 85.5% 32.3%
3611368 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.61 55.0 3.32e-01 100.0% 53.4%
3739291 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.60 55.0 3.60e-01 100.0% 46.3%
3736890 5.1.5.236 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR3_1st 0.60 55.0 3.13e-01 100.0% 12.5%
3542023 5.1.4.139 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40_2 0.60 55.0 3.50e-01 100.0% 45.0%
3878645 5.1.4.170 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EML_2 0.60 55.0 3.56e-01 100.0% 29.0%
None 0.60 55.0 3.40e-01 100.0% 26.7%
3917456 5.1.5.93 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.60 55.0 3.39e-01 100.0% 46.4%
3585126 5.1.5.76 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_NOL10_N 0.60 54.0 3.43e-01 100.0% 23.2%
3274001 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.60 55.0 3.54e-01 100.0% 37.9%
3666797 5.1.4.45 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_3 0.60 55.0 3.37e-01 100.0% 33.5%
None 0.60 54.0 3.49e-01 100.0% 48.9%
3935202 220.1.1.161 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.59 50.0 4.29e-01 92.1% 83.3%
3397374 5.1.4.6 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40,ANAPC4_WD40 0.59 54.0 3.45e-01 100.0% 28.0%
3999197 5.1.4.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.59 53.0 3.38e-01 100.0% 47.3%
4946928 5.1.4.43 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP_3 0.59 54.0 3.33e-01 100.0% 79.5%
3263889 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.59 53.0 3.24e-01 100.0% 34.2%
3709381 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.59 54.0 3.33e-01 100.0% 33.7%
3353029 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.59 50.0 4.13e-01 93.4% 76.3%
3429270 5.1.5.93 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.58 54.0 3.25e-01 100.0% 24.7%
3540088 220.1.1.184 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_S11IP 0.58 49.0 4.04e-01 90.8% 86.2%
3272412 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 53.0 3.72e-01 100.0% 41.7%
6517 268.1.1.3 a+b two layers › Sterol carrier protein-like › Sterol carrier protein, SCP-related › Sterol carrier protein, SCP-related › SCP2_2 0.58 37.0 3.29e-01 90.8% 46.7%
3432461 5.1.4.73 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RAB3GAP2_N 0.58 53.0 3.25e-01 100.0% 73.0%
3634343 5.1.5.93 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_EMC1_N 0.57 52.0 3.15e-01 100.0% 31.6%
3783578 5.1.5.10 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › ANAPC4_WD40 0.57 52.0 3.50e-01 100.0% 35.4%
3920678 5.1.5.41 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40_2 0.57 50.0 3.23e-01 97.4% 25.1%
3572056 5.1.4.394 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_FAM234A_B 0.57 52.0 3.14e-01 100.0% 22.5%
None 0.57 51.0 3.23e-01 100.0% 28.6%
None 0.57 52.0 3.27e-01 100.0% 24.7%
3871951 5.1.4.162 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD_LRWD1 0.56 50.0 3.20e-01 100.0% 28.6%
3933904 5.1.4.333 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF31099 0.56 47.0 2.92e-01 90.8% 16.9%
3894438 5.1.4.73 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RAB3GAP2_N 0.56 51.0 3.09e-01 100.0% 72.2%
3496954 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 48.0 2.99e-01 96.1% 20.2%
4021315 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.55 48.0 3.14e-01 94.7% 22.5%
3919540 5.1.5.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.55 50.0 3.24e-01 100.0% 31.8%
3677778 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.55 49.0 3.26e-01 100.0% 42.0%
3303112 5.1.2.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.55 47.0 4.15e-01 93.4% 68.2%
3596066 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 45.0 3.82e-01 92.1% 84.8%
3413325 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 48.0 3.04e-01 100.0% 39.2%
3660758 5.1.10.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 12-bladed 0.53 46.0 3.78e-01 100.0% 66.2%
3354455 5.1.11.9 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 9-bladed › RAB3GAP2_N 0.51 46.0 2.86e-01 98.7% 22.6%
4314504 295.1.1.0 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 42.0 3.54e-01 93.4% 91.1%